RNA id: TU48535


Basic Information

Item Value
RNA id TU48535
length 2531
lncRNA type sense_over
GC content 0.32
exon number 2
gene id G41026
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5258551 ~ 5308118 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atttgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcttgtgtgcgtgcgtgtgcttATCCCATTATCAGTAAATCAGCAATCAGCCTGACACACAGTTTGACCTGTGTTTGGGATTTTGTTTGGAGGAGTGTACCTCGGCTTCTGTGAGCTCCACTTACCCATAAACCTCTTCTCTTCATGTTTCACGTCCCGTCTCATAGTACTGGGAATTCCGACTCTATTCAGTGAGTCAGAGCTTTTGACTCAGCTCAcaaataagagtcgactcttttcaGTTCTAAACAGGACACAATTTTTGCCATCAATTGTTTCATGAAATCTTACTCTACCTTCAAATTGCATTTTATAAAGTCTGttcaaatatttgtaaaatCAGCAAGGCACTATAAATGTGGAAGAATCCCTGCGTTAAAGATTTTGTGCTGCTatgtctgtgcttcattaagaagatttGTTTCCCTTTTTCCTGGTAACTGACAAGTAACGCTGCTTCGTACACACAGCTcagagtcaaacacacacctctccattcacactaacaaacaGCTCAGATGCTGAAAAGAGGTTTTGATTGAAGCGTTGTAATTGAGTGACACAATGGCAAGAGTAACAGCATTTCCTACAGCTacaaaaaacagacttttttttacgCTGTGTGATTTCATTGGTCTTTTAACCCAATAAAATCTGGGCAGAATTCTATAACAGGCAGATCTAACAGTGTTATAacgtgtgttctccatgtcagttTATACGataaagatcctctaacgatagacctgcaattaaagaaaatgactaagCTCTGCTTACGTCATCAAGCAGCACGATCCGGAAATCAGCTCATGCAGAAAATGGGCtcgcataaacacaaacatcttCACAGTGAGCTTGAGGCAATAAAGATGGTTTTTATGCCACTGATTGGTGGAGGCATTATCCATCCGCGATTCCCGTGAGCGCagtatctcaagaacgagttgTTTAACGTtctgtaggatttatatggaattatcttCATAACCAGCcaaatgaactgattagattttggatccaaacagggtcaaggtcacagcaaggtcaaatgtctaaaatagtTTCTCTTCAATCGCTTCCTtcatgtttgaagtatattaTAAGGGTATTTCCagctactgtatttgtagctgtcccatgaGTTTCATGTCATCCTGTGCCATCcttttttagacaaaaaagatttttagattttagacgAACAGCAGTCACACTctgaaatttttattaaaaaatctgaCTCTTCCAGAACTGACTACTGGTCGCAACAGCACTAAATTGAGCACGTCACATCATGTGTTCTCAACTcacgaccaaagaattcttttacgatgTGTGGATTTCGTAAATTGTACAATGTAACGTCAGCTTAAAAGAATTGTTCACGAATGACAGATGTTTAAATCCGACCTTACCACGATACAGCTACTGCTATTTGGTGCATGTGACTTTCGCCTATAGAACGTTTACAGAGAAATTATTAATGCTTTATCAATGTGATTTCCACTAAAGCTGATAAGTTCATGGAAGTGAACTAGTCCTGAACCCTGTTTGGATCCAGCGGTTATAATATACACTACCAGCAAAACACTAATTGCATTACATTAAACACTGCCATGTTAATGTCCGTTATTTCACCTTTTGTGTTAACCTTTTAAATTGAGTTTAAAAATCCACAAAAGAACATTGGACAGACTAAGACTGTCTTCCATCACTATTTACTTATTTGCTCTCCTCATTTCCATTTATCCTTTGCTTCTTCTTTCGTGTGATCTGCACTAGGCACggctttctcattttttttccaatatgcATCACGCCAGGTCTGTGCTTCTGCATGCTGGGTCCAGAGCCGTGCAGCCACCGAGATTAAAATATCTCCATAGGCAGCCACGGATTAGCGTTACCTATTCATTTCACTTCTCAACATGCTGGCTAGAGAAAGAGCGGAGGACGAGGAGAGAAGGCTGACATGTTGGCATCgagattaaaatataaattcaaaaaGCAGTGGATTAAAACCTCTATTCATTCTGTGGCTTCTGGTGCACGGAGACCGAGAACACAGCATCCACTCTGAcgtacactcaccgtccactttaataggaacacctgtacacctgcacatttatgcagttatccgatcaaccaatcatgtggcagcagcacaatgcataaaatcatgcaggtacaggccaagggcttcagttaatgttcacatcaaacatcagaatggagaagacgtgtgatctctgtggctttaaccatggcatggttgttagtgccagatgggctggtttgagtatttctgaaactgctgatctcctgggattttcacacacaacagtctctagagtttacacagaatggtgcgaaaaacaaaaaaaaaacatcctgttagtctgaaacagcttgttgatgagGGATCAGAGGAGAGTGACCTGACTGctctgagctgccaggaaggat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48526 lncRNA upstream 32123 5224948 ~ 5226428 (+) True G41019
XR_004577893.1 lncRNA upstream 35776 5219493 ~ 5222775 (+) True LOC117596903
TU48521 lncRNA upstream 128165 5130120 ~ 5130386 (+) True G41015
TU48512 lncRNA upstream 178690 5079299 ~ 5079861 (+) True G41006
TU48405 lncRNA upstream 355932 4899491 ~ 4902619 (+) True G40908
TU48564 lncRNA downstream 25266 5333384 ~ 5335565 (+) True G41049
TU48780 lncRNA downstream 510430 5818548 ~ 5819447 (+) True G41232
TU48872 lncRNA downstream 568030 5876148 ~ 5876422 (+) True G41299
TU48876 lncRNA downstream 909347 6217465 ~ 6228351 (+) False inpp4b
XR_004577767.1 lncRNA downstream 931249 6239367 ~ 6262431 (+) True LOC117596795
XM_034302684.1 mRNA upstream 366172 4882996 ~ 4892379 (+) True prmt9
XM_034302686.1 mRNA upstream 366172 4882996 ~ 4892379 (+) False prmt9
XM_034302685.1 mRNA upstream 366172 4882996 ~ 4892379 (+) False prmt9
XM_034302676.1 mRNA upstream 486947 4664316 ~ 4771604 (+) True nr3c2
XM_026937146.2 mRNA downstream 291767 5599885 ~ 5626477 (+) False si:dkey-27h10.2
XM_034302752.1 mRNA downstream 291767 5599885 ~ 5620916 (+) True si:dkey-27h10.2
XM_026937136.2 mRNA downstream 328749 5636867 ~ 5674128 (+) True frem3
XM_026942811.2 mRNA downstream 369062 5677180 ~ 5689962 (+) True LOC113544150
XM_026940088.2 mRNA downstream 389088 5697206 ~ 5716038 (+) True LOC113542501
TU47789 other upstream 1423940 3831949 ~ 3834611 (+) False LOC113545357
XR_004577910.1 other upstream 3092767 2165623 ~ 2165784 (+) True LOC113546173
TU45993 other upstream 3167245 2085465 ~ 2091306 (+) False stox2a
TU48562 other downstream 10416 5318534 ~ 5341750 (+) True G41047
TU49753 other downstream 1895832 7203950 ~ 7221023 (+) True G42075
XR_003404394.2 other downstream 2341080 7649198 ~ 7666033 (+) False naa15b
TU50445 other downstream 3157629 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 3161506 8469624 ~ 8469696 (+) False trnak-cuu

Expression Profile