Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU48780 |
| length | 850 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 3 |
| gene id | G41232 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 5818548 ~ 5819447 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU48564 | lncRNA | upstream | 482983 | 5333384 ~ 5335565 (+) | True | G41049 |
| TU48545 | lncRNA | upstream | 496157 | 5270315 ~ 5322391 (+) | True | G41032 |
| TU48535 | lncRNA | upstream | 510430 | 5258551 ~ 5308118 (+) | True | G41026 |
| TU48544 | lncRNA | upstream | 548353 | 5264901 ~ 5270195 (+) | True | G41031 |
| TU48526 | lncRNA | upstream | 592120 | 5224948 ~ 5226428 (+) | True | G41019 |
| TU48872 | lncRNA | downstream | 56701 | 5876148 ~ 5876422 (+) | True | G41299 |
| TU48876 | lncRNA | downstream | 398018 | 6217465 ~ 6228351 (+) | False | inpp4b |
| XR_004577767.1 | lncRNA | downstream | 419920 | 6239367 ~ 6262431 (+) | True | LOC117596795 |
| TU48917 | lncRNA | downstream | 441158 | 6260605 ~ 6263303 (+) | True | G41331 |
| TU48931 | lncRNA | downstream | 484450 | 6303897 ~ 6304105 (+) | True | G41345 |
| XM_026940064.2 | mRNA | upstream | 67516 | 5733447 ~ 5751032 (+) | True | LOC113542482 |
| XM_026940056.2 | mRNA | upstream | 67516 | 5736975 ~ 5751032 (+) | False | LOC113542482 |
| XM_026940077.2 | mRNA | upstream | 88886 | 5718697 ~ 5729662 (+) | True | LOC113542496 |
| XM_026940088.2 | mRNA | upstream | 102510 | 5697206 ~ 5716038 (+) | True | LOC113542501 |
| XM_026942811.2 | mRNA | upstream | 128586 | 5677180 ~ 5689962 (+) | True | LOC113544150 |
| XM_026944869.2 | mRNA | downstream | 24119 | 5843566 ~ 5857230 (+) | True | smarca5 |
| XM_026944878.2 | mRNA | downstream | 24119 | 5843566 ~ 5857229 (+) | False | smarca5 |
| XM_034302371.1 | mRNA | downstream | 75984 | 5895431 ~ 6227357 (+) | False | inpp4b |
| XM_034302375.1 | mRNA | downstream | 75984 | 5895431 ~ 6227357 (+) | False | inpp4b |
| XM_034302381.1 | mRNA | downstream | 76019 | 5895466 ~ 6227357 (+) | True | inpp4b |
| XR_003404319.2 | other | upstream | 461851 | 5263582 ~ 5356697 (+) | False | znf827 |
| TU48562 | other | upstream | 476798 | 5318534 ~ 5341750 (+) | True | G41047 |
| TU47789 | other | upstream | 1983937 | 3831949 ~ 3834611 (+) | False | LOC113545357 |
| XR_004577910.1 | other | upstream | 3652764 | 2165623 ~ 2165784 (+) | True | LOC113546173 |
| TU45993 | other | upstream | 3727242 | 2085465 ~ 2091306 (+) | False | stox2a |
| TU49753 | other | downstream | 1384503 | 7203950 ~ 7221023 (+) | True | G42075 |
| XR_003404394.2 | other | downstream | 1829751 | 7649198 ~ 7666033 (+) | False | naa15b |
| TU50445 | other | downstream | 2646300 | 8465747 ~ 8466312 (+) | True | G42685 |
| trnak-cuu | other | downstream | 2650177 | 8469624 ~ 8469696 (+) | False | trnak-cuu |
| TU52056 | other | downstream | 4732812 | 10552259 ~ 10558295 (+) | True | sprn |
