RNA id: TU48872


Basic Information

Item Value
RNA id TU48872
length 275
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G41299
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 5876148 ~ 5876422 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaagagactgaacaagctggttaggagagccagctctgtcctgggctgcccactggactctgtggaggtggtgggtgagaggaggatgttagccaagctgacatctattatgaacaacacctctcaccccctgtatgggactgtggagaccctgtgtagctctttcagcagcagactgCTACACCCCCAGTGTAGGAAGGAGCGCTACCGCAGGTCATTCATACCAGTGGCTGTCAGACTTTACAACACCGCATTACAGTAATGTTCAGATGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48780 lncRNA upstream 56701 5818548 ~ 5819447 (+) True G41232
TU48564 lncRNA upstream 540583 5333384 ~ 5335565 (+) True G41049
TU48545 lncRNA upstream 553757 5270315 ~ 5322391 (+) True G41032
TU48535 lncRNA upstream 568030 5258551 ~ 5308118 (+) True G41026
TU48544 lncRNA upstream 605953 5264901 ~ 5270195 (+) True G41031
TU48876 lncRNA downstream 341043 6217465 ~ 6228351 (+) False inpp4b
XR_004577767.1 lncRNA downstream 362945 6239367 ~ 6262431 (+) True LOC117596795
TU48917 lncRNA downstream 384183 6260605 ~ 6263303 (+) True G41331
TU48931 lncRNA downstream 427475 6303897 ~ 6304105 (+) True G41345
TU49224 lncRNA downstream 642637 6519059 ~ 6552115 (+) True G41600
XM_026944869.2 mRNA upstream 18918 5843566 ~ 5857230 (+) True smarca5
XM_026944878.2 mRNA upstream 18919 5843566 ~ 5857229 (+) False smarca5
XM_026940064.2 mRNA upstream 125116 5733447 ~ 5751032 (+) True LOC113542482
XM_026940056.2 mRNA upstream 125116 5736975 ~ 5751032 (+) False LOC113542482
XM_026940077.2 mRNA upstream 146486 5718697 ~ 5729662 (+) True LOC113542496
XM_034302371.1 mRNA downstream 19009 5895431 ~ 6227357 (+) False inpp4b
XM_034302375.1 mRNA downstream 19009 5895431 ~ 6227357 (+) False inpp4b
XM_034302381.1 mRNA downstream 19044 5895466 ~ 6227357 (+) True inpp4b
XM_034302378.1 mRNA downstream 66827 5943249 ~ 6227357 (+) False inpp4b
XM_034302389.1 mRNA downstream 152988 6029410 ~ 6227357 (+) False inpp4b
XR_003404319.2 other upstream 519451 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 534398 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 2041537 3831949 ~ 3834611 (+) False LOC113545357
XR_004577910.1 other upstream 3710364 2165623 ~ 2165784 (+) True LOC113546173
TU45995 other upstream 3784927 2085465 ~ 2091221 (+) False stox2a
TU49753 other downstream 1327528 7203950 ~ 7221023 (+) True G42075
XR_003404394.2 other downstream 1772776 7649198 ~ 7666033 (+) False naa15b
TU50445 other downstream 2589325 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 2593202 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 4675837 10552259 ~ 10558295 (+) True sprn

Expression Profile