RNA id: TU48931


Basic Information

Item Value
RNA id TU48931
length 209
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G41345
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 6303897 ~ 6304105 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctggttcctctcaaggtttcttcctcattttgtctcagggagtttttccttgccaacgttgcctctggcttgctcatgagggataaattcacatatttacaatatattttttgaatccatttatttctgtaaagctgctttgtgataatgtccattgttaaaagcactatacaaataaaatgaattgaatgactaaatatggagaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48917 lncRNA upstream 40594 6260605 ~ 6263303 (+) True G41331
XR_004577767.1 lncRNA upstream 41466 6239367 ~ 6262431 (+) True LOC117596795
TU48876 lncRNA upstream 75546 6217465 ~ 6228351 (+) False inpp4b
TU48872 lncRNA upstream 427475 5876148 ~ 5876422 (+) True G41299
TU48780 lncRNA upstream 484450 5818548 ~ 5819447 (+) True G41232
TU49224 lncRNA downstream 214954 6519059 ~ 6552115 (+) True G41600
TU49277 lncRNA downstream 280750 6584855 ~ 6585448 (+) True G41651
TU49279 lncRNA downstream 294598 6598703 ~ 6598967 (+) True G41653
TU49280 lncRNA downstream 297807 6601912 ~ 6602163 (+) True G41654
TU49390 lncRNA downstream 358177 6662282 ~ 6702806 (+) True G41752
XM_026945865.2 mRNA upstream 8420 6265930 ~ 6295477 (+) True rnf150a
XM_034302393.1 mRNA upstream 75212 6029524 ~ 6228685 (+) False inpp4b
XM_034302375.1 mRNA upstream 76540 5895431 ~ 6227357 (+) False inpp4b
XM_026939728.2 mRNA downstream 22755 6326860 ~ 6371028 (+) True tbc1d9
XM_026939737.2 mRNA downstream 22755 6326860 ~ 6371028 (+) False tbc1d9
XM_026944523.2 mRNA downstream 71464 6375569 ~ 6383460 (+) True ucp1
XM_026934248.2 mRNA downstream 94789 6398894 ~ 6405603 (+) True gprin3
XM_026934053.2 mRNA downstream 114157 6418262 ~ 6463985 (+) True zgc:154142
XR_003404319.2 other upstream 947200 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 962147 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 2469286 3831949 ~ 3834611 (+) False LOC113545357
XR_004577910.1 other upstream 4138113 2165623 ~ 2165784 (+) True LOC113546173
TU45995 other upstream 4212676 2085465 ~ 2091221 (+) False stox2a
TU49753 other downstream 899845 7203950 ~ 7221023 (+) True G42075
XR_003404394.2 other downstream 1345093 7649198 ~ 7666033 (+) False naa15b
TU50445 other downstream 2161642 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 2165519 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 4248154 10552259 ~ 10558295 (+) True sprn

Expression Profile