Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU49277 |
| length | 594 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 1 |
| gene id | G41651 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 6584855 ~ 6585448 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU49224 | lncRNA | upstream | 32740 | 6519059 ~ 6552115 (+) | True | G41600 |
| TU48931 | lncRNA | upstream | 280750 | 6303897 ~ 6304105 (+) | True | G41345 |
| TU48917 | lncRNA | upstream | 321552 | 6260605 ~ 6263303 (+) | True | G41331 |
| XR_004577767.1 | lncRNA | upstream | 322424 | 6239367 ~ 6262431 (+) | True | LOC117596795 |
| TU48876 | lncRNA | upstream | 356504 | 6217465 ~ 6228351 (+) | False | inpp4b |
| TU49279 | lncRNA | downstream | 13255 | 6598703 ~ 6598967 (+) | True | G41653 |
| TU49280 | lncRNA | downstream | 16464 | 6601912 ~ 6602163 (+) | True | G41654 |
| TU49390 | lncRNA | downstream | 76834 | 6662282 ~ 6702806 (+) | True | G41752 |
| TU49521 | lncRNA | downstream | 365944 | 6951392 ~ 6968839 (+) | True | G41857 |
| TU49621 | lncRNA | downstream | 431256 | 7016704 ~ 7016925 (+) | True | G41951 |
| XM_026933194.2 | mRNA | upstream | 38800 | 6466066 ~ 6546055 (+) | True | fam13a |
| XM_026933204.2 | mRNA | upstream | 38800 | 6466066 ~ 6546055 (+) | False | fam13a |
| XM_034302683.1 | mRNA | upstream | 38800 | 6470480 ~ 6546055 (+) | False | fam13a |
| XM_026934053.2 | mRNA | upstream | 120870 | 6418262 ~ 6463985 (+) | True | zgc:154142 |
| XM_026934248.2 | mRNA | upstream | 179252 | 6398894 ~ 6405603 (+) | True | gprin3 |
| XM_026935886.2 | mRNA | downstream | 76930 | 6662378 ~ 6680286 (+) | True | ppm1k |
| XM_026935894.2 | mRNA | downstream | 76953 | 6662401 ~ 6680286 (+) | False | ppm1k |
| XM_034302744.1 | mRNA | downstream | 77100 | 6662548 ~ 6680286 (+) | False | ppm1k |
| XM_034302743.1 | mRNA | downstream | 77177 | 6662625 ~ 6680286 (+) | False | ppm1k |
| XM_026934017.2 | mRNA | downstream | 95693 | 6681141 ~ 6699519 (+) | True | abcg2d |
| XR_003404319.2 | other | upstream | 1228158 | 5263582 ~ 5356697 (+) | False | znf827 |
| TU48562 | other | upstream | 1243105 | 5318534 ~ 5341750 (+) | True | G41047 |
| TU47789 | other | upstream | 2750244 | 3831949 ~ 3834611 (+) | False | LOC113545357 |
| XR_004577910.1 | other | upstream | 4419071 | 2165623 ~ 2165784 (+) | True | LOC113546173 |
| TU45995 | other | upstream | 4493634 | 2085465 ~ 2091221 (+) | False | stox2a |
| TU49753 | other | downstream | 618502 | 7203950 ~ 7221023 (+) | True | G42075 |
| XR_003404394.2 | other | downstream | 1063750 | 7649198 ~ 7666033 (+) | False | naa15b |
| TU50445 | other | downstream | 1880299 | 8465747 ~ 8466312 (+) | True | G42685 |
| trnak-cuu | other | downstream | 1884176 | 8469624 ~ 8469696 (+) | False | trnak-cuu |
| TU52056 | other | downstream | 3966811 | 10552259 ~ 10558295 (+) | True | sprn |
