Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU49791 |
| length | 756 |
| lncRNA type | inter_gene |
| GC content | 0.51 |
| exon number | 2 |
| gene id | G42098 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 7361200 ~ 7364931 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU49621 | lncRNA | upstream | 344275 | 7016704 ~ 7016925 (+) | True | G41951 |
| TU49521 | lncRNA | upstream | 392361 | 6951392 ~ 6968839 (+) | True | G41857 |
| TU49390 | lncRNA | upstream | 658394 | 6662282 ~ 6702806 (+) | True | G41752 |
| TU49280 | lncRNA | upstream | 759037 | 6601912 ~ 6602163 (+) | True | G41654 |
| TU49279 | lncRNA | upstream | 762233 | 6598703 ~ 6598967 (+) | True | G41653 |
| TU49923 | lncRNA | downstream | 57160 | 7422091 ~ 7422296 (+) | True | G42208 |
| XR_004577840.1 | lncRNA | downstream | 108439 | 7473370 ~ 7475040 (+) | True | LOC117596850 |
| TU50006 | lncRNA | downstream | 259938 | 7624869 ~ 7630105 (+) | False | scoca |
| TU50015 | lncRNA | downstream | 276004 | 7640935 ~ 7644922 (+) | True | G42295 |
| TU50029 | lncRNA | downstream | 356718 | 7721649 ~ 7721851 (+) | True | G42304 |
| XM_034301211.1 | mRNA | upstream | 2639 | 7356734 ~ 7358561 (+) | True | LOC117596353 |
| XM_034301187.1 | mRNA | upstream | 4507 | 7354068 ~ 7356693 (+) | True | LOC113541239 |
| XM_034302876.1 | mRNA | upstream | 14633 | 7343286 ~ 7346567 (+) | True | LOC113542004 |
| XM_026938402.2 | mRNA | upstream | 45738 | 7291721 ~ 7315462 (+) | True | LOC113541438 |
| XM_026945753.2 | mRNA | upstream | 205700 | 7150285 ~ 7155500 (+) | True | hadh |
| XM_026941346.2 | mRNA | downstream | 19141 | 7384072 ~ 7393247 (+) | True | faah2a |
| XM_026941379.2 | mRNA | downstream | 31494 | 7396425 ~ 7408116 (+) | False | LOC113543274 |
| XM_026941387.2 | mRNA | downstream | 33068 | 7397999 ~ 7408116 (+) | True | LOC113543274 |
| XM_026941456.2 | mRNA | downstream | 48577 | 7413508 ~ 7420929 (+) | True | LOC113543333 |
| XM_026941437.2 | mRNA | downstream | 255614 | 7620545 ~ 7630140 (+) | True | scoca |
| TU49753 | other | upstream | 140177 | 7203950 ~ 7221023 (+) | True | G42075 |
| XR_003404319.2 | other | upstream | 2004503 | 5263582 ~ 5356697 (+) | False | znf827 |
| TU48562 | other | upstream | 2019450 | 5318534 ~ 5341750 (+) | True | G41047 |
| TU47789 | other | upstream | 3526589 | 3831949 ~ 3834611 (+) | False | LOC113545357 |
| XR_004577910.1 | other | upstream | 5195416 | 2165623 ~ 2165784 (+) | True | LOC113546173 |
| XR_003404394.2 | other | downstream | 284267 | 7649198 ~ 7666033 (+) | False | naa15b |
| TU50445 | other | downstream | 1100816 | 8465747 ~ 8466312 (+) | True | G42685 |
| trnak-cuu | other | downstream | 1104693 | 8469624 ~ 8469696 (+) | False | trnak-cuu |
| TU52056 | other | downstream | 3187328 | 10552259 ~ 10558295 (+) | True | sprn |
| XR_004577889.1 | other | downstream | 3229643 | 10594574 ~ 10608704 (+) | False | LOC113543929 |
