RNA id: XM_026941445.2


Basic Information

Item Value
RNA id XM_026941445.2
length 3301
RNA type mRNA
GC content 0.41
exon number 4
gene id scoca
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7620545 ~ 7630140 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGTCAGTATTACAGTAAAACTCCCTCCGACCCCCCAGTGTGAGGACTTTGGCGTGTAGAGTCATCATTCCAGAGAGCCTTCGTGGGTGTTTTTCTTACCACGGAGAGATTGTTATTTTATCCAGAAGCTCACAGGCGCCGACTGTGACTCTGCAGCCCTGCGCCCTAGACCAGACGAGCAGCTCTCCACCATGAACTGTGACATGGATGGAGACATGGAGAATCAGGTTGAAGTGGAGGAGAAGACACGCCTCATTAACCAAGTGCTGGAGCTCCAACACACACTAGAAGATCTCTCTGCCCGAGTGGATGCTGTGAAGGAAGAGAACCTGAAGCTGAAGTCGGAGAACCAGGTTCTGGGCCAGTACATTGAGAACCTCATGTCAGCCTCGAGTGTGTTTCAGACCACTGACACCAAGAGCAAACGGAAATAAACACGTGGAGCATTGTCTTCATTCCCAACGGCTAGCTCATCCTTCCACAGAGGCCAGTATGCACCAATGTTCAGGCTTTCATACGTACACCCATGAGCTCTGAGTTTATTTTGTTCTATAAAAACTTATTTCACTCTTCGCCTCTGCATTCATTGCCTTATCGTCCTGGCAGGTTGTGGATAATGCTCATGCTGAGAGACATATGCTCTGTTAAAGAGGTCATTTTCATTCTGTGGTCAGATATCGACAGCATTAATGCACATCAGCTTCTCTGTAGGTCTTTTATTAGCTTCTCATCAACCCATTTGATAAAATAGTGCAGTCTTCTTTTTAAATACAGGGCAAACACAATTTTGTTTTAGTgacctgcttgttttttttttttttttactttgtcacTACATTATGATATGTTAAAGATGAAAGCGCAGACGAGACGTGCCGTGAACTCTGCAGCACAGGAAGATTAACCTGAACGTGCATGAGGTGCCATTATGTATTCTTCCAAAGAGACATGCATGATTTAAGAAGCTGATATTGATGATTATTGGCGAATGAATGGCAACGATGTAGAACTATCATGGACTATAAATTTATACTGTATTcagtttattttgcattaacaGTCAGAGATGGAGTTGATAAAAAGTCAGTAGAGGTAGTAGCTCCTCTACAGTTAAGGGGCTGTTTATAAATATTCAGGGGCCATAAGTGACATCCTACTTGGGCCCCATCAGACAAAGACAATGTCTTTATTGTCACATATGCAAATACAGTACAGTTacattcttttcttcgcatatcctaGCTTGGGTCCGCCATGATACAGCGCTCCtagagcagagagggttaagagccttgcaCAAAGGCCCAGTAATGGCAGTTTGGTCATTCTGGGCTTGAACCCACACCCTTCTGATTAGTAGCCCTgagctttaaccactgagccactacTGCCACCAGTATGCATGCTTGTTAGACATAGAATAGGCCTGTGCATCAGGATGTCAACTACTTTGCGTCACCAAGCCAGATACAATTTTCACACCACAAGGGGGCCTTCTATGTGAAATCCTGATACATGAGAACCATGAACTCAACATCTCCAAAAGATTTGTAGATctcaaaaaaattattacaatatatacactatatgaccaacagtatgtggacacctgaccatcaaacccacatcacacatcatacatgggccttctccaaacttttgccacataACTGGAAGCACATTGTGgtatagaatgtctttctatggtgtagcattaagatttcccttcactggaactaaggggaccaaacatgttctagcatgacaattcccctgtgcataaagcaagctccatgaagaaaGGGGTTGTGAAgtttttttggaaagagtcCAACTCCAACACTTTTGCGATGAACTGGAATATTGACTGTGTGCCAGACCTTCTCGCCCACGACATCACTAAAGCTCtggtggctgaatgggcaaaaatcccaacagccacgttccaaaatgtagtggaaagccctCCCAGAAGAGCAGAAGCTGTTATAAGGGTGTTATAATGCCcttggttttggaatgggatccACATGAGATGGTCAAGTGTTCACAAACTGTTGGCAATAGTGTAcgaattaaaaaacaaacaaacaaacaaaaaaaaattcattcttaCGGGGGCCCTAAGTGACTGCTTATAGAGCTAGAAGCCGCTCTGTGTGTTAGAGACGAGAAGACTGTTCCATAACTACCGAGGGTCACTTTCTTTCTTGATTGAGCAGATTTTTAAATAGATGCATGGTGGCTAATAAATGAGATCTAGGCTAGGTTATTTAGCAACTTCCCAAGTCAGATACTATCACACTAAATAGTTAAGGTAGTACTATTTAGACATAACTAGTTGCAGCAGTATGCGATTTGGGACACGATTTTTCCACAATACTGTCTTccagtttaatttttaagttaCAAATACAGACTGCTGCTTACAGAGAGACATTTCCTTTCACAAAGGAGCAGAAAGTACATCAGCTGTTGTCTTTGTTTCACAGATAACAGACAGCAACAGGAGTAAAACCCCTGTTTGGTTAGCGCTAGTTCTTGGACATTGACTTGCTATGTCAGGGCTGTTAATTTTTCACTGCTCTGTGCTCTGATTGTTTACTCTCATCTTATTCACTTTGTTTAACAGCatcttcaaaatgaataaatacaactGTAGCAAGAGGTGGAAAGAGAACAGTAGATTGCACTAACATTACAGTGAAGTGTAGAAAGGATGACTTGCTGGATACATGAAAGGACAGTGGAGATGAGGATGTGAGACGGCACTAATAAATGGACCGTCTGGCTTTTACAGTAAAAAGGGAAATAGCAGCCGTGTTGAGTGATATTGATCTGAGAGAGTACTCTGGATCCACGGGTGCATTTGATTTCTGCAAACCATGTAGACAAAGTAGAGCCGGGAAATAACAAGACAATAACTTTAGATACGTCTCCAACGCGGTCTCactaaataaacagattttagaGGTGCAGCGTATGAGTAAGGTAGAACTGATTAGATTAATGTAATTACATTTTCTGGACATTAATTAATGTAGAGATAGCAATGTTACAAGTGTGACACTTCACTGTGCAACATACAGAACTCAAGTCATAAACATGATAGAGCTTCATTGTTACAAAGGAATGGTCatgtattacattatttattattgtgttaatgTACTTTAATAATGTATATGAACATTTCTTCAGGTATTAACTTGAGGCTGCACACATCCAATGTAGATAAAGCCTTGCGTGTAAATTGTACTATTACAAACTTGTgttaataaattgtttttgcttttgctta

Function

GO:

id name namespace
GO:0005829 cytosol cellular_component
GO:0000139 Golgi membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577840.1 lncRNA upstream 149806 7473370 ~ 7475040 (+) True LOC117596850
TU49923 lncRNA upstream 202550 7422091 ~ 7422296 (+) True G42208
TU49784 lncRNA upstream 231062 7348159 ~ 7393784 (+) True G42093
TU49791 lncRNA upstream 259915 7361200 ~ 7364931 (+) True G42098
TU49621 lncRNA upstream 607921 7016704 ~ 7016925 (+) True G41951
TU50015 lncRNA downstream 10795 7640935 ~ 7644922 (+) True G42295
TU50029 lncRNA downstream 91509 7721649 ~ 7721851 (+) True G42304
TU50032 lncRNA downstream 103302 7733442 ~ 7733655 (+) True G42307
TU50188 lncRNA downstream 236535 7866675 ~ 7866918 (+) True G42442
TU50193 lncRNA downstream 279284 7909424 ~ 7909698 (+) True G42447
XM_026941456.2 mRNA upstream 203917 7413508 ~ 7420929 (+) True LOC113543333
XM_026941379.2 mRNA upstream 216730 7396425 ~ 7408116 (+) False LOC113543274
XM_026941387.2 mRNA upstream 216730 7397999 ~ 7408116 (+) True LOC113543274
XM_026941346.2 mRNA upstream 231599 7384072 ~ 7393247 (+) True faah2a
XM_034301211.1 mRNA upstream 266285 7356734 ~ 7358561 (+) True LOC117596353
XM_026941266.2 mRNA downstream 19071 7649211 ~ 7671410 (+) True naa15b
XM_026941415.2 mRNA downstream 45096 7675236 ~ 7677859 (+) True LOC113543305
XM_026941359.2 mRNA downstream 50629 7680769 ~ 7694527 (+) True htra3a
XM_034302952.1 mRNA downstream 74309 7704449 ~ 7712546 (+) False LOC113543264
XM_034302950.1 mRNA downstream 74309 7704449 ~ 7707685 (+) True LOC113543264
TU49753 other upstream 403823 7203950 ~ 7221023 (+) True G42075
XR_003404319.2 other upstream 2268149 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 2283096 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 3790235 3831949 ~ 3834611 (+) False LOC113545357
XR_004577910.1 other upstream 5459062 2165623 ~ 2165784 (+) True LOC113546173
XR_003404394.2 other downstream 19058 7649198 ~ 7666033 (+) False naa15b
TU50445 other downstream 835607 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 839484 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 2922119 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 2964434 10594574 ~ 10608704 (+) False LOC113543929

Expression Profile