RNA id: TU50015


Basic Information

Item Value
RNA id TU50015
length 457
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G42295
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7640935 ~ 7644922 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACAACATAAACCTTATTGACCTCTGACCTGGAAAGAGACATTAGCGTCAGCTTTTACTTCACTGCTGTCGTCCTCGGAGTCCACCTCTCCATCCTCCACCTGTGCCTCTTCATCATCCTCCAGCTCATCCTCCTGGGCCCATGTTACCACAGCGATGGACAGGAGCAGGAGACACGTCCAACTCCACCTCAGCTTCATCTAAACCTTATACTCTCGAATATTTTCCCCCTGAAGTCTCCGCTCACGCCACAAAACAGCCTGATACAATAACCGACTTCGCTTCAATTAATCCCACTGCATTGAATGAAGTGTGTGACAGCAGAAATGGAGCAGAGAGCTCAGGGCGCAGAGCTTcaagacaaaaaacagaatTCCAAATGACCCTCTACGCGCTACATgcgtgcactatgtagtgtataAAATAACTGACTCCGCACCCTATGTAGCGCACTTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50006 lncRNA upstream 10830 7624869 ~ 7630105 (+) False scoca
XR_004577840.1 lncRNA upstream 165895 7473370 ~ 7475040 (+) True LOC117596850
TU49923 lncRNA upstream 218639 7422091 ~ 7422296 (+) True G42208
TU49784 lncRNA upstream 247151 7348159 ~ 7393784 (+) True G42093
TU49791 lncRNA upstream 276004 7361200 ~ 7364931 (+) True G42098
TU50029 lncRNA downstream 76727 7721649 ~ 7721851 (+) True G42304
TU50032 lncRNA downstream 88520 7733442 ~ 7733655 (+) True G42307
TU50188 lncRNA downstream 221753 7866675 ~ 7866918 (+) True G42442
TU50193 lncRNA downstream 264502 7909424 ~ 7909698 (+) True G42447
TU50268 lncRNA downstream 530563 8175485 ~ 8176073 (+) True G42522
XM_026941437.2 mRNA upstream 10795 7620545 ~ 7630140 (+) True scoca
XM_026941427.2 mRNA upstream 10795 7620555 ~ 7630140 (+) False scoca
XM_026941445.2 mRNA upstream 10795 7624846 ~ 7630140 (+) False scoca
XM_026941456.2 mRNA upstream 220006 7413508 ~ 7420929 (+) True LOC113543333
XM_026941379.2 mRNA upstream 232819 7396425 ~ 7408116 (+) False LOC113543274
XM_026941266.2 mRNA downstream 4289 7649211 ~ 7671410 (+) True naa15b
XM_026941415.2 mRNA downstream 30314 7675236 ~ 7677859 (+) True LOC113543305
XM_026941359.2 mRNA downstream 35847 7680769 ~ 7694527 (+) True htra3a
XM_034302952.1 mRNA downstream 59527 7704449 ~ 7712546 (+) False LOC113543264
XM_034302950.1 mRNA downstream 59527 7704449 ~ 7707685 (+) True LOC113543264
TU49753 other upstream 419912 7203950 ~ 7221023 (+) True G42075
XR_003404319.2 other upstream 2284238 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 2299185 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 3806324 3831949 ~ 3834611 (+) False LOC113545357
XR_004577910.1 other upstream 5475151 2165623 ~ 2165784 (+) True LOC113546173
XR_003404394.2 other downstream 4276 7649198 ~ 7666033 (+) False naa15b
TU50445 other downstream 820825 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 824702 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 2907337 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 2949652 10594574 ~ 10608704 (+) False LOC113543929

Expression Profile