RNA id: TU50032


Basic Information

Item Value
RNA id TU50032
length 214
lncRNA type intronic
GC content 0.46
exon number 1
gene id G42307
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7733442 ~ 7733655 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATGCAAAGACAGGGTAAACACAAAGATAAGTACTGCAGGCTGGTGGGTAACACAGATAGAGACACTAGGTAAATGACTGAGGGAAAAGGAGCACACACCTCACGTGTCTTGGAAGGGGAATGCTGGAGAAAACGTAGGGAGATGTAGAGGAGCTTCAAATGAACACAGGTACTCACAGAGAAGAGGTCTATTCCTAGTTGAGGCCAGACAAAG

Function

GO:

id name namespace
GO:0006833 water transport biological_process
GO:0008146 sulfotransferase activity molecular_function
GO:0016782 transferase activity, transferring sulfur-containing groups molecular_function

KEGG:

id description
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50029 lncRNA upstream 11591 7721649 ~ 7721851 (+) True G42304
TU50015 lncRNA upstream 88520 7640935 ~ 7644922 (+) True G42295
TU50006 lncRNA upstream 103337 7624869 ~ 7630105 (+) False scoca
XR_004577840.1 lncRNA upstream 258402 7473370 ~ 7475040 (+) True LOC117596850
TU49923 lncRNA upstream 311146 7422091 ~ 7422296 (+) True G42208
TU50188 lncRNA downstream 133020 7866675 ~ 7866918 (+) True G42442
TU50193 lncRNA downstream 175769 7909424 ~ 7909698 (+) True G42447
TU50268 lncRNA downstream 441830 8175485 ~ 8176073 (+) True G42522
TU50277 lncRNA downstream 456375 8190030 ~ 8190247 (+) True G42531
TU50244 lncRNA downstream 463217 8196872 ~ 8197242 (+) True G42498
XM_034302952.1 mRNA upstream 20896 7704449 ~ 7712546 (+) False LOC113543264
XM_034302950.1 mRNA upstream 25757 7704449 ~ 7707685 (+) True LOC113543264
XM_034302951.1 mRNA upstream 25757 7704449 ~ 7707685 (+) False LOC113543264
XM_026941359.2 mRNA upstream 38915 7680769 ~ 7694527 (+) True htra3a
XM_026941415.2 mRNA upstream 55583 7675236 ~ 7677859 (+) True LOC113543305
XM_026943765.2 mRNA downstream 15981 7749636 ~ 7755159 (+) True gpr78a
XM_026941926.2 mRNA downstream 23955 7757610 ~ 7771338 (+) False cpz
XM_026941917.2 mRNA downstream 23956 7757611 ~ 7771338 (+) True cpz
XM_026945018.2 mRNA downstream 336166 8069821 ~ 8080290 (+) True lrpap1
XM_026932353.2 mRNA downstream 708130 8441785 ~ 8445916 (+) True paip2b
XR_003404394.2 other upstream 67409 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 512419 7203950 ~ 7221023 (+) True G42075
XR_003404319.2 other upstream 2376745 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 2391692 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 3898831 3831949 ~ 3834611 (+) False LOC113545357
TU50445 other downstream 732092 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 735969 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 2818604 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 2860919 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 3365938 11099593 ~ 11171114 (+) False dntt

Expression Profile