RNA id: TU50124


Basic Information

Item Value
RNA id TU50124
length 1278
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G42391
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 7671587 ~ 7672864 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTATGGTTTTTCATTctttgagttgtttttttattacaaaaaaaattcattatcATACAACAAACTCATCATTCCACATTGAAAACGAAGTAGGGgcaagagagagtgtgttaaaggaatactccagtacCACATGTGCGATTATCACAGACAAGAATTGCAATGTGTTTCTCTGAACCTGCTTACGAGAAACTCACTTGTAACAAAAGACTAAGGGTAGTCGCTGAATTCGGTTAAGAAACTGAGTGGAGTGCTTTCATGAATTCTTTAGTCAAATGAATCTGTTAATAAGAATTGTCCTATAAGAGAAAATGTGTGGCAAGTTGTTACCACAACCACACATTAGTGGTTCTGATCGCACTTGAATTACACAAAACCTTCAGAAAAGTAaccaaaatgacattttactgtattgctccaACATTGGAAATATTTCCTCATGTCTGCCTGACTtgtaaatgttgttgttttgaagTAATTTTTCTCAGTCACACGGTAAACAGCAGTCAGTAGATGAGAGGGCTAATATTTCTCAGATGTGCACAAAGCAACTGGAAGAAGGCAAAAGTCTGGTGTGCTACTTAATAAAAATCagctcctccttttttttttttaccaaccgAAGAGACTACATTCCTGCCTACTTGTTTTCTGTTGGCTTACAAGACCAAGGctcatgaattcacaggtcaaagttcacctacaTAACATTGGCACAAAGTAACCACAACTATGCATTTTTCACATTCtgcatcctttccccttcagtgaattgtcTTTATCCATGGGTGAATTTTGTCTGATTGCTTCTATCAGGAATATCTCCAGTTTTCAGTATATCTCCAGTATCACCATAGTAAGGagttaaaaatcacaaatgctACGACTAAACTGTAAATGCTGGCACCTCTGAATTACTGATGGAATTTAACAATTGACTTGAGTTTTGTGTCAACAGGTTTTCCATTCTGCAGAGAAACGTCAAAATTCTTGCCCGTGGCAATCGAACATGCGCTATTGATGTGGTAGATGGGTTGAAAATGCTGGAGTATCCCTTTAAGGAGAGCGATCAAAGCAAGAGAGAAGAGAGCAGATTTACCTTTAAGATTTCACAAGGTTGCTGATTACGCTCTACCACCGCTGCTGGTCTAATCGCTTTAAATGAATAACAGGGAGCACTTGCTGATTGAGACTCTGATTTTGAGGTCCTAGAAACTACCTTCAAATTAGCTCCCCTTAGCCAAACCTCAGTGACAACGAAGTATAAAAGATGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50091 lncRNA downstream 19367 7568371 ~ 7652220 (-) True G42361
TU50045 lncRNA downstream 232351 7439038 ~ 7439236 (-) False maml3
TU50043 lncRNA downstream 232698 7436442 ~ 7438889 (-) True G42315
TU49892 lncRNA downstream 328906 7342467 ~ 7342681 (-) True G42179
TU49878 lncRNA downstream 355991 7313668 ~ 7315596 (-) True G42173
TU50125 lncRNA upstream 2624 7675488 ~ 7675772 (-) True G42392
TU50127 lncRNA upstream 4233 7677097 ~ 7678737 (-) False G42394
TU50130 lncRNA upstream 4233 7677097 ~ 7678945 (-) True G42394
TU50131 lncRNA upstream 7956 7680820 ~ 7681430 (-) True G42395
TU50133 lncRNA upstream 14433 7687297 ~ 7687689 (-) True G42397
XM_026941317.2 mRNA downstream 25512 7630169 ~ 7646075 (-) False clgn
XM_026941308.2 mRNA downstream 25558 7630169 ~ 7646029 (-) False clgn
XM_034302632.1 mRNA downstream 26684 7630169 ~ 7644903 (-) True clgn
XM_026941246.2 mRNA downstream 81924 7438904 ~ 7589663 (-) True maml3
XM_026941281.2 mRNA downstream 287424 7361915 ~ 7384163 (-) False si:ch211-113e8.3
XM_026941398.2 mRNA upstream 29788 7702652 ~ 7715901 (-) True zgc:153642
XM_026943612.2 mRNA upstream 150266 7823130 ~ 7825476 (-) True hmx4
XM_026943559.2 mRNA upstream 153770 7826634 ~ 7829546 (-) True hmx1
XM_026942712.2 mRNA upstream 234364 7907228 ~ 7909974 (-) True adra2c
XM_034301237.1 mRNA upstream 380630 8053494 ~ 8069324 (-) True LOC117596360
XR_004577908.1 other downstream 467436 7161474 ~ 7204151 (-) False lef1
XR_004577909.1 other downstream 467436 7161474 ~ 7204151 (-) False lef1
XR_004577821.1 other downstream 1852074 5756711 ~ 5819513 (-) False gab1
TU48529 other downstream 2443664 5203706 ~ 5227923 (-) False lsm6
trnam-cau_1 other upstream 794120 8466984 ~ 8467055 (-) True trnam-cau_1
trnam-cau_2 other upstream 795172 8468036 ~ 8468107 (-) True trnam-cau_2
trnam-cau_3 other upstream 796207 8469071 ~ 8469142 (-) True trnam-cau_3
trnam-cau_4 other upstream 797122 8469986 ~ 8470057 (-) True trnam-cau_4
trnae-cuc_7 other upstream 797494 8470358 ~ 8470429 (-) True trnae-cuc_7

Expression Profile