RNA id: TU50244


Basic Information

Item Value
RNA id TU50244
length 371
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G42498
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8196872 ~ 8197242 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATCACACAGTATTCAACTTTAAATGCAGTTCACAGACTTTAcattccacctttttttttttattactgggCCTCTTTTATCAATCCTTTGTAGGAAAATCTCTGTGTATGGTATATAAAGCATGGTGAATCAGTATCATCAGTCCAAGCAACTTTCACAGATTTAAGTTAAAGCCAATTTCTTTTATTGGCTTATAGCTGGAAGTTCAAGTGCAATAAAGCCATTATGTTCAGAGAATCACAGAGTGTCTGCAGAGgtgagaaactgaaaataatGACCATGTCTCTTCCTGCTATAGGTACGTGGTTGTCTATGTGGGGGTCTTTGTCTCTTTTGTCCACAGGGTGATCAATATTAAACCACATGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50277 lncRNA upstream 6625 8190030 ~ 8190247 (+) True G42531
TU50268 lncRNA upstream 20799 8175485 ~ 8176073 (+) True G42522
TU50193 lncRNA upstream 287174 7909424 ~ 7909698 (+) True G42447
TU50188 lncRNA upstream 329954 7866675 ~ 7866918 (+) True G42442
TU50032 lncRNA upstream 463217 7733442 ~ 7733655 (+) True G42307
TU50295 lncRNA downstream 22674 8219916 ~ 8223825 (+) True G42548
XR_004577895.1 lncRNA downstream 73168 8270410 ~ 8271905 (+) True LOC117596904
XR_004577894.1 lncRNA downstream 73168 8270410 ~ 8271905 (+) False LOC117596904
XR_004577904.1 lncRNA downstream 228568 8425810 ~ 8428641 (+) True LOC117596914
TU50449 lncRNA downstream 272387 8469629 ~ 8469881 (+) True trnak-cuu
XM_026945018.2 mRNA upstream 116582 8069821 ~ 8080290 (+) True lrpap1
XM_026941926.2 mRNA upstream 425534 7757610 ~ 7771338 (+) False cpz
XM_026941917.2 mRNA upstream 425534 7757611 ~ 7771338 (+) True cpz
XM_026943765.2 mRNA upstream 441713 7749636 ~ 7755159 (+) True gpr78a
XM_034301226.1 mRNA upstream 460963 7716040 ~ 7735909 (+) True LOC117596357
XM_026932353.2 mRNA downstream 244543 8441785 ~ 8445916 (+) True paip2b
XM_026934625.2 mRNA downstream 251415 8448657 ~ 8452951 (+) True dok1a
XM_026934984.2 mRNA downstream 259486 8456728 ~ 8461540 (+) False si:ch211-89o9.6
XM_026934975.2 mRNA downstream 259489 8456731 ~ 8464439 (+) True si:ch211-89o9.6
XM_026935251.2 mRNA downstream 314735 8511977 ~ 8517230 (+) True tmem176
XR_003404394.2 other upstream 530839 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 975849 7203950 ~ 7221023 (+) True G42075
XR_003404319.2 other upstream 2840175 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 2855122 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 4362261 3831949 ~ 3834611 (+) False LOC113545357
TU50445 other downstream 268505 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 272382 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 2355017 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 2397332 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 2902351 11099593 ~ 11171114 (+) False dntt

Expression Profile