Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU50268 |
| length | 425 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 2 |
| gene id | G42522 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 8175485 ~ 8176073 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU50193 | lncRNA | upstream | 265787 | 7909424 ~ 7909698 (+) | True | G42447 |
| TU50188 | lncRNA | upstream | 308567 | 7866675 ~ 7866918 (+) | True | G42442 |
| TU50032 | lncRNA | upstream | 441830 | 7733442 ~ 7733655 (+) | True | G42307 |
| TU50029 | lncRNA | upstream | 453634 | 7721649 ~ 7721851 (+) | True | G42304 |
| TU50015 | lncRNA | upstream | 530563 | 7640935 ~ 7644922 (+) | True | G42295 |
| TU50277 | lncRNA | downstream | 13957 | 8190030 ~ 8190247 (+) | True | G42531 |
| TU50244 | lncRNA | downstream | 20799 | 8196872 ~ 8197242 (+) | True | G42498 |
| TU50295 | lncRNA | downstream | 43843 | 8219916 ~ 8223825 (+) | True | G42548 |
| XR_004577895.1 | lncRNA | downstream | 94337 | 8270410 ~ 8271905 (+) | True | LOC117596904 |
| XR_004577894.1 | lncRNA | downstream | 94337 | 8270410 ~ 8271905 (+) | False | LOC117596904 |
| XM_026945018.2 | mRNA | upstream | 95195 | 8069821 ~ 8080290 (+) | True | lrpap1 |
| XM_026941926.2 | mRNA | upstream | 404147 | 7757610 ~ 7771338 (+) | False | cpz |
| XM_026941917.2 | mRNA | upstream | 404147 | 7757611 ~ 7771338 (+) | True | cpz |
| XM_026943765.2 | mRNA | upstream | 420326 | 7749636 ~ 7755159 (+) | True | gpr78a |
| XM_034301226.1 | mRNA | upstream | 439576 | 7716040 ~ 7735909 (+) | True | LOC117596357 |
| XM_026932353.2 | mRNA | downstream | 265712 | 8441785 ~ 8445916 (+) | True | paip2b |
| XM_026934625.2 | mRNA | downstream | 272584 | 8448657 ~ 8452951 (+) | True | dok1a |
| XM_026934984.2 | mRNA | downstream | 280655 | 8456728 ~ 8461540 (+) | False | si:ch211-89o9.6 |
| XM_026934975.2 | mRNA | downstream | 280658 | 8456731 ~ 8464439 (+) | True | si:ch211-89o9.6 |
| XM_026935251.2 | mRNA | downstream | 335904 | 8511977 ~ 8517230 (+) | True | tmem176 |
| XR_003404394.2 | other | upstream | 509452 | 7649198 ~ 7666033 (+) | False | naa15b |
| TU49753 | other | upstream | 954462 | 7203950 ~ 7221023 (+) | True | G42075 |
| XR_003404319.2 | other | upstream | 2818788 | 5263582 ~ 5356697 (+) | False | znf827 |
| TU48562 | other | upstream | 2833735 | 5318534 ~ 5341750 (+) | True | G41047 |
| TU47789 | other | upstream | 4340874 | 3831949 ~ 3834611 (+) | False | LOC113545357 |
| TU50445 | other | downstream | 289674 | 8465747 ~ 8466312 (+) | True | G42685 |
| trnak-cuu | other | downstream | 293551 | 8469624 ~ 8469696 (+) | False | trnak-cuu |
| TU52056 | other | downstream | 2376186 | 10552259 ~ 10558295 (+) | True | sprn |
| XR_004577889.1 | other | downstream | 2418501 | 10594574 ~ 10608704 (+) | False | LOC113543929 |
| XR_004577793.1 | other | downstream | 2923520 | 11099593 ~ 11171114 (+) | False | dntt |
