RNA id: TU50277



Basic Information


Item Value
RNA id TU50277
length 218
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G42531
representative True

Chromosome Information


Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8190030 ~ 8190247 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


agtcattgttggaaagggttcaaatacacaaaaatgctggaaaaccaaagaatttgtgggacctgaaggatttttctgaagaacagcaggcagtttaactgttcaggacaaacaagggactcttgaacaactatcagtaaacaaaaaaacacagctgtggatcattcaggtaacaacacagtattaagaatcaaggggatgtaaacttttgaacgggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU50268 lncRNA upstream 13957 8175485 ~ 8176073 (+) True G42522
TU50193 lncRNA upstream 280332 7909424 ~ 7909698 (+) True G42447
TU50188 lncRNA upstream 323112 7866675 ~ 7866918 (+) True G42442
TU50032 lncRNA upstream 456375 7733442 ~ 7733655 (+) True G42307
TU50029 lncRNA upstream 468179 7721649 ~ 7721851 (+) True G42304
TU50244 lncRNA downstream 6625 8196872 ~ 8197242 (+) True G42498
TU50295 lncRNA downstream 29669 8219916 ~ 8223825 (+) True G42548
XR_004577895.1 lncRNA downstream 80163 8270410 ~ 8271905 (+) True LOC117596904
XR_004577894.1 lncRNA downstream 80163 8270410 ~ 8271905 (+) False LOC117596904
XR_004577904.1 lncRNA downstream 235563 8425810 ~ 8428641 (+) True LOC117596914
XM_026945018.2 mRNA upstream 109740 8069821 ~ 8080290 (+) True lrpap1
XM_026941926.2 mRNA upstream 418692 7757610 ~ 7771338 (+) False cpz
XM_026941917.2 mRNA upstream 418692 7757611 ~ 7771338 (+) True cpz
XM_026943765.2 mRNA upstream 434871 7749636 ~ 7755159 (+) True gpr78a
XM_034301226.1 mRNA upstream 454121 7716040 ~ 7735909 (+) True LOC117596357
XM_026932353.2 mRNA downstream 251538 8441785 ~ 8445916 (+) True paip2b
XM_026934625.2 mRNA downstream 258410 8448657 ~ 8452951 (+) True dok1a
XM_026934984.2 mRNA downstream 266481 8456728 ~ 8461540 (+) False si:ch211-89o9.6
XM_026934975.2 mRNA downstream 266484 8456731 ~ 8464439 (+) True si:ch211-89o9.6
XM_026935251.2 mRNA downstream 321730 8511977 ~ 8517230 (+) True tmem176
XR_003404394.2 other upstream 523997 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 969007 7203950 ~ 7221023 (+) True G42075
XR_003404319.2 other upstream 2833333 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 2848280 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 4355419 3831949 ~ 3834611 (+) False LOC113545357
TU50445 other downstream 275500 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 279377 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 2362012 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 2404327 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 2909346 11099593 ~ 11171114 (+) False dntt

Expression Profile