RNA id: TU50295


Basic Information

Item Value
RNA id TU50295
length 2824
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G42548
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8219916 ~ 8223825 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgccATTACAGTAAATACAACGACTTCGTCTTCATTCCACCAGCTTGCAGACATGAGTGTGGAATATTTAACACACCAATGCAGGTTTTCAGGAAGCTCCAGTGCACGACTATCACAGCCTTCCTTACTGAACAGGACAGTAGATGAGTGAGTAGACACAAACGGTCTCATAATCCACGCTGTCTTTACTCACTCATCTACTGTCAGCTTCCACACACTGATTGATCTGTGCCTCAAGTATAATGAGTTAAATGGAAATCAGCACTGAAGTGTTCTGGTATAAGCAAACTAGGGGAAAGGATGCAGGTTGTGCTGACGGACGCGTGAGGAGATTTGAAtaaaggaaacagaaaatacaaGTGCTAAAAATCAAACCAGCCAACCTACTGTTAATTCTAATcagtgtcttgttttttttcttcttcacattcAATTCATCCCATTTGCGTTTTACAGGCTTGGGTGTAGAAGTTGTTTTCAGAAGTTTATCGAGGAAATACTTTAGACTTTAGAGCAGTGCTGAAGCTGAAATCTGTGTACATGAAGAAACACTGACTGAGCATGTCTATAAAAGTGTACACTTCAACttggaaaatgtgaaaagatgaatattagaCTCTCTATACCGATAAAACAATGCAGCATTCAAGATGACGGTAATGCAAGAAACCTCACGGCCGTGATATGACAGAGAGTCAAATTTATTCCAAGTTGGTCACCATACTTCAGGTGTTGCATCCTCCTCCACTGTAGTTTTAACATCACATGAAGACTCAATATTAAAAGCAGACAACGGCATGCTGCAGGCTAAATATACAAGATGCTGCCAGGCTTCTATTTACAGTGAAGGGACGCCTCAGCTGTCTAAACACTTCCAATCTGATTGTTCGCTCCAAGCCTTCGGGGAGTGAAAGTTGTCAGttcatcattacacacactgtttacgTCTAGGGAAGTGGTTTGCAAACATTCAGTATATGTAGTCTCTTTATGCCATCTGTCGTCTGATGGCTATTCTCATGCAGCAGAGTTTTAGTAGTATAACACAAATATTTCTTCtcttacatacattttacatgattttcGACACAACATAAAAAATAGACTTCCGGTTGTGACACTAGATCAAGAATCACATTACATCCTGAGcattaaaacaaatcaatattCAAAAACCAGTTCAGAAGGTGGAACCAGATTACATCAAATCACTGTACGTGCGTACACCAGTTTAACAAGCTCACTTTGTATTCTTATCTGCTACGACTCCACGATCTAAAAACACCGAGCGCTACAGCTGTTTCAAGCCTTTCTGCATCAGGCTTCGCTTCTTCACGACTGAAGATCAAGtgtcaaatttaaatttttaaaaaatatttaaacataaaaactaaaaaaaaaagagagagaactgGTGTTGTTAGATAACGGTTAGTAAACTTTGTGCCAGTCGATTTTACCATCTCACAGccctaaaaatatataatcaagcacattttacattttaaatacatggAAATAACGTCATCTTTTTGTTTCAACATGGCTTACGCAAGTTTCCTCAGACGAGGGAGGATCATCAAGTCAGTTTACAGTTCCACTCTCTCTACTTTCCCCAAGTGCTAAAGGTCAAATCAGGCaaacttttgtacaaaggaaTGACTTCAAGAAGAAAAGTCTTCTGCTAAAAATGTTGACTCTTTCATGCAGATATTATGTTTGAGTGAGTACTTAACTTTGCGGTTCTTGGATAGTTTTGGACACTAAGAGATGCGAAGCTGCGAGGCTGGAAAAATGAGATCTTAAACTTAGAAAAAGGATTTGTACCATGATCTGTTCATTGCAAATATACCAGCTAGCAGTAAggagtgtttaaaaatgtatattttgctCTTATCCCCACATTTGCCTTCAGACATTACATCTAATTCGATTACTGATTTGTTCCAGACATGTTTCACAATTAACAAGACTGGCAGGCAACTCTGTATTGCAGAGTTCATACGTTAGGGGACATGCCATGGTTGCTCTTTGTAAAGCTGGTAATTAACGTGTACTATGTTGCCTCTGTGGTTTGGTCCTATGGTTAATGTAAAAGTAAACTGTCTACGTCCACTAGATTACTATGTCCTGCACGATGAGCAGTGCATCACAGCCAGTCTAATGGCTTGAGGTGTATGCCTCATAGTGACGTGTCCTGGTGAATGCTCTGCAGACAGCACAGCAGCTGGTGGTAAGGACTACCGGGGGATGCCACCATCTCAAAAACAGACTGGAAGGATCTGCGGTCCAGCTCCTCGTCAATCTGGTGTCGATAGAAGTCCATGGCTACCAGACAGAACAGGCTAACGTCCACTGTGTCTGCCTTACCCATGCGACTGATCACGTGAGGAAGGAGGGCAGATATCCACTGGCTGGTGGAGGCGCtgacaaaaaaacaggaaaggcTCCacattgccatggcaacaggtGTTCTCTGTGTGAAGTTGGAAAGCGAGAGCAGCACCCAGTCTCGCACCATGGAGGACTGACCAGTGGCGTGGAGCGTCTGAAACACCTGGAACAAGGAGCACAAATTATAATAACCGGGCTACACTGATATTGCTGTTAATGTTATAATCGCTTGCTGTCACGGAAAACTAAAGTCACATTAtaagcttgatttttttttttggttaaatttaaTCATTCTGCCTTGACAGTCTACATTTGTATTTGTGAGAGACTCATATTCTGTGAAAAGATCTAGGCCCTGAAATGACCTGAGCACATTGTCAAAATCAATGTTacattttctggaaaaaaaaaaaaaagaaagaatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50244 lncRNA upstream 22674 8196872 ~ 8197242 (+) True G42498
TU50277 lncRNA upstream 29669 8190030 ~ 8190247 (+) True G42531
TU50268 lncRNA upstream 43843 8175485 ~ 8176073 (+) True G42522
TU50193 lncRNA upstream 310218 7909424 ~ 7909698 (+) True G42447
TU50188 lncRNA upstream 352998 7866675 ~ 7866918 (+) True G42442
XR_004577895.1 lncRNA downstream 46585 8270410 ~ 8271905 (+) True LOC117596904
XR_004577894.1 lncRNA downstream 46585 8270410 ~ 8271905 (+) False LOC117596904
XR_004577904.1 lncRNA downstream 201985 8425810 ~ 8428641 (+) True LOC117596914
TU50449 lncRNA downstream 245804 8469629 ~ 8469881 (+) True trnak-cuu
TU50484 lncRNA downstream 327673 8551498 ~ 8551884 (+) True G42717
XM_026945018.2 mRNA upstream 139626 8069821 ~ 8080290 (+) True lrpap1
XM_026941926.2 mRNA upstream 448578 7757610 ~ 7771338 (+) False cpz
XM_026941917.2 mRNA upstream 448578 7757611 ~ 7771338 (+) True cpz
XM_026943765.2 mRNA upstream 464757 7749636 ~ 7755159 (+) True gpr78a
XM_034301226.1 mRNA upstream 484007 7716040 ~ 7735909 (+) True LOC117596357
XM_026932353.2 mRNA downstream 217960 8441785 ~ 8445916 (+) True paip2b
XM_026934625.2 mRNA downstream 224832 8448657 ~ 8452951 (+) True dok1a
XM_026934984.2 mRNA downstream 232903 8456728 ~ 8461540 (+) False si:ch211-89o9.6
XM_026934975.2 mRNA downstream 232906 8456731 ~ 8464439 (+) True si:ch211-89o9.6
XM_026935251.2 mRNA downstream 288152 8511977 ~ 8517230 (+) True tmem176
XR_003404394.2 other upstream 553883 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 998893 7203950 ~ 7221023 (+) True G42075
XR_003404319.2 other upstream 2863219 5263582 ~ 5356697 (+) False znf827
TU48562 other upstream 2878166 5318534 ~ 5341750 (+) True G41047
TU47789 other upstream 4385305 3831949 ~ 3834611 (+) False LOC113545357
TU50445 other downstream 241922 8465747 ~ 8466312 (+) True G42685
trnak-cuu other downstream 245799 8469624 ~ 8469696 (+) False trnak-cuu
TU52056 other downstream 2328434 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 2370749 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 2875768 11099593 ~ 11171114 (+) False dntt

Expression Profile