RNA id: XM_034303138.1


Basic Information

Item Value
RNA id XM_034303138.1
length 4832
RNA type mRNA
GC content 0.56
exon number 20
gene id rgs12b
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8134641 ~ 8216551 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agaaaccccACTTCCACTCCACTCTCAGCTCCTGTTCAGCTCCAGCAGCTGGCTCACCTCCTTTTGTTTTAGGAAAACAGAGTAATATTATTATCCAGTTTGTCTTGTGTAGCAGGACCGAATCCTGACTAAGGAGATAACTAGAGGAAGTGGAGGTGTTCCAGGAGCCAGGTTTGCATCAGGATGTTCCCTTCCTGAAAGCGACTGTAACAGACAGGATGATCTCACCTGAGTGTTACATTTAGCCCGCCTGCTCTGCATTTGTGAAGCCCTCGACAGCTGCGTGCGAAAGAAGGCACAAACCAACAATGTTCAGATCATCTGAGGCAAGCAGACGGCGTGCTAATGGCCAGGCCCTGGGCCGCGTCAGAGGGGTGGAGGTGGCTCGAGGAAGGACAGGTTACGGTTTCACTCTCTCAGGCCACTCGCCCTGTGTGCTCAGCTGCGTCCTGAAAGGCAGTCCGGCTGACTACGTTGGCCTACGTGCCGGAGACCAGATCCTCGCTGTGAATGACATCAACGTGGCGAAGGCATCCCATGAGGATGTGGTCAAGCTGATTGGACGCTGCTCGGGCGTGCTACACCTGCTCATCGCTGAGAGCGGACAGCTGGACTCGTGCTCCAGTGACGAAGAGCTCGGATTCCATGAGCACAAAAGCCACTGGCTCCGACCAAAGATGGACTCCAAGACTTTGGGAATAAACCGTGCTGAGCGCGTGGTGGCTGAAATGCAGTCTGGAGGGATCTTCAACATGATCTTTGAGAACTCCTCCAGCCACTCCTCCAGCAGCTCGGAGAAAGCCGCTGCAAAACGGAGACCTATCTCTGAGCTGGACTTCCTGTGTGGAGAGGTCGAGGCCCACAGGAGTGATGTGAACCTTCTCTCAGAACAGGAAATGGCCAGAGTGCTGCGAGACGACTCCGTGTTTGTGGATGTGTTTGAACCTGAGCGGCAGGAAGCTGACTCAGCAGGCATCCTCAATGTCGGCATGATTGTGGGCTACTTGGGCTCCATTGAGCTGGCGTCGAGTGGTGCCAACCTGGAGAGCGACAGCGTGCAGGCAATACGTGGCTGCATGCGCCGCCTGCGAGCCGAGCACAAGGTGCACTCACTGGTGCTGCTCGAGGTGCTTCACGACCGTGTACTCCTACGTAATGAGCGCAGAGCCGTCTTGGCTGCCTACCCAGCCGAGAAGCTGGCATTCAGCGCCGTGTGCCCAGATGACCGCCGCTTCTTTGGCCTGGTCACTATGCAGGCTGCTGAGGATCACGGCATGAGTGCAATTGCAGATGAAGACCAGGGCTCGAGAACCTCCTGCCATGTCTTCCTcgttgatcctgagctctgtcATCACAAGgTACATCAAGGGATCTCTCGGCGTTTCGGTTTTAACTGCACTCCAGATCCGGACACGGGTGGCTGTTTGGAATTCCCCCCAACGTCTCAGCCGCTGCTGCAGTTTGTCTCAGTGCTCTACCGTGACATGGGCGAGTCCATCGAAGGCGTGCGAGCTCGAGCGTTCCTCGACGGTGACCTGGACGCCCAGCAGAACAACAGCACCAGCAGCAACAGCGACAGTGGAATCGGCAACTTCCtgccagaagaaaaaaacaaccgCGTCCTCTTGGTTGACCTCGGTGCCAATCCTGCCCGCCATGTGCCCACAGGATTATGGGAAAGTGCACCGGGCTGTAGGAACCCTAGCGCTCAGGCTggtctccttcctcctcctcctcctcctccctctatAACTCATCGTAACGGCTACAGGCACGAGTTCTCCGAGCCACACCCACAATCCCACACAGACCCGCCCCCTCTGTCCAGCAGACACCTGAGCTCCTCCTCTCGGCTGGACGTATCCGGACTTCCCGCCCGCCACCATTTCCCCGCCCACTCTAAGAAGGGTGCAGGGGGCCAGCGCTGGCTCCCTGTTCATGTCCTGAGAGAGTGGCATCAGGGCCGCAGCAGCGATCAGGAGTCCTACAGCGAGTCCACGGACGGCTGGTCCAGCGCTAACTGCAGCACGCTGCCGCCTCCCATGAGTAAGATCCCGGCTGATCGGTACCGCGCGGCGCGAGACATCGCCTCCCAGCCCCATCGGCTCCATGCCCACAAGGACGAGTGGGCCAACAAGCTGTTTGGGACGGAGAAACACTTTTGCGAGCACCAACAGCTTCCACAGCAGCACAATGGCAAGAGGGCAAAAGACTCAGAGAAGAAGggcgGAAGGTTCCGGGGCGTCACTATGGGATTTCCCCAACGCTCATCTGGGAGGAGATCATTCGGCCGCTCCAAACGCCTCAGCTTGTCTCACTCACTGGACGACCTGGAgTCGGCAGCTGTCTCTGATGGCGaGCTGAACAGTGCAGATCTGAAGGGCTGTGGCAGTGACAACAGCCTGAACAGCAATGCCAGTCTACCCAGCGTGCAGTGCCACAGACGGCACCCGGAGCGGCGCGTCGCAGCATGGGCCGTCTGCTTCGAGCGTCTGCTGCAGGACCCCGTCGGCATCCGTTACTTCTCAGAGTTTCTGAAGAAGGAGTTCAGTGAGGAGAATATCCTGTTCTGGCAAGCATGTGAATTTTTCAGCCATGTTCCAGAAACGGACAAGAAGCAGTTATCCCAGAAGGCGAGAGAGATCTACAACAGCTTCCTGTCCAGTAAGGCCACCACGCCAGTCAATATCGACAGTCAGGCACAGCTGGCCGACGACATCCTCAATGCTCCACGGCCCGACATGTTCAAGGAGCAGCAGCTACAAATCTTTAACTTGATGAAGTTTGACAGTTACACACGCTTCCTGAAGTCCTTCCTGTATCAGGAGTGTATGTTGGCTGAGGTGGAGGGCCGTCCTCTACCAGACCCACACCACATCCCCAGCAGCCCCACGTCAAAACATAGCACCAGCTCAGAACGCTCCAACCTCTCCACACCCAagaaggaggagaagaagagcaAATCAGTGAAGGCGCTCAATGAGGAGTGTAAAGATGAACATGGtgataaaaagaaaggaagttTATTTCCCTGGCCCAGGAACCGAAGCTTTGGGAAAGGACACAAAAAGAAAGACCTTGGAGAGTACAGCTTTTCGGGCAATGATGGGCGCAGAGAGTCACAGGGTTCTTTATCTTCTGGTGCGAGTCTGGAGCTCGGCACTTCAGCTTCAGGCAAGAACGAGGGAGAGGTGTCGCGTAACTCCATGTCGTTATCGGAGCGTGCTGTGCgttactgtaacattaacctGCCGGATGGGTCGTGTTGCTCAGTACCCATAAGGCCCGGCGTGTCCATCCGTGAGGTTCTGCTAGGCCTGTGTGAGAAACTCTGCATCAACCTGGCAGCTGTAGACCTTTTCCTGGTGGGAGGAGAGAAGCCTTTAGTATTAGACCAGGACTGCATGACGCTGTGTTCCCGAGACCTGCGACTAGAAAAACGTACATTATTCAGGCTGGATCTGGTGCCTATAAACCGTTCTGTAGGGCTGAAAGCTAAACCCACCAAGCCTGTGACTGAGGTGCTGAGGCCAGTCGTGGCTAAATACGGCCTGCACTTAGGAGACCTGGTAGCCAGGATTaGTGGGGAGAAGGAGCCGCTGGATCTGGGGCTGCCTATTTCCAACCTGGACGGACTCAGAGTGGTGCTAGAGGCGGCTGAACATGGTAGCGCTGCAAAAGacaaacagaaactGACCTTGACAAAAAGCCATGGCCCGCCACTGTCCACACGAAGCCAGTCTGCTACAGCGGAGGACAGATCATCAGGGAAGGCTACGACTGTCAAAACCAGGGCCCAGATGGAAAAGCGAAAACAGAAAAAGCTTAATATAGATGAAGCTGAAGAATTCTTCGAGCTCATATCCAAAGCACAGAGCAACCGAGCTGACGACCAGCGGGGTCTGCTGAACAAATCTGACCTCGTGTTGCCTGACTTCCTGCGCCTTGACCATGACACGAGTCCCGGAGATGTCCCCATCAGCTCCACCCCTGATCCCCGCAAGCCCCGTCCACGCTCTAAAGAGAACGGCTCTGCCCTCAGCGCCAGCCACCAGACACAGAGCTTGGATTCGGGTGTGGAAGGGCCAGGTGGCCGGAGAGCCTTCATGCCACTCCATAGGAACCCCGCTCCCCGTAAGCAGGCGACGTTTGGCCCTACCCTCTCACCTATCTCACACAGTCATGGCGAATGGAAACGAGAGAGCGGGGCCCAGGcactggaggaggaggagcatgGTACGGACCTGACGCTGGTGGGTGAAGGTGATATCGCTATCCCTAACAGCCTGCTCCTCCCTCCATCCCCTTTGCCCCTCCCTCGTTCCCCAGATCGGCCCCGCCTCCTAAGAGAGGACGCTTACCAGGACAGCTGGGCCCAGCCAGTTTTTGTCAGCCTTTATGGCGCATCATATTTcggagtgtgtttatgttccTGTCTGAGTGAATGCGTTCATCCCTACGTGTCTGGTTTTCtgtgtgagGAAGAGAACGAAGAAGGCAGAAGGACAAAAGCAGCGTTTTCAAACTGTCCCAGAAGAGAACGCCCTCTGCTCCTCCTCTTGCTCCTCCCCCTGCCCCTAaacctgctcctcctcctccttctgctcctcctcctccacctccacctccacgaGTCAGAGACGGGCCTAAACGCACTCCTCTCCCCAGTCGACAGGTGCTGGatgtggatggtgtgtgtgtagaggacaCCAGGACTCGGGATGGAGAGATAAACTCTGGTGTACAGAAGCAGACGGGGGATGTGAAGAATCGCAGGGTGAGAATCAGAAGAGGAGTGCGGCAGACGTCAGGACACCTCCCTAACAAACCCC

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005057 obsolete signal transducer activity, downstream of receptor molecular_function
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404555.2 lncRNA downstream 155460 7977141 ~ 7979763 (-) True LOC113544822
TU50169 lncRNA downstream 314362 7820650 ~ 7820861 (-) True G42426
TU50138 lncRNA downstream 440730 7693418 ~ 7694493 (-) True G42401
TU50137 lncRNA downstream 441242 7693214 ~ 7693981 (-) False G42401
TU50136 lncRNA downstream 444196 7690711 ~ 7691027 (-) True G42400
TU50420 lncRNA upstream 82629 8299180 ~ 8299444 (-) True G42665
TU50426 lncRNA upstream 163789 8380340 ~ 8380715 (-) True G42671
TU50701 lncRNA upstream 267604 8484155 ~ 8486010 (-) False LOC113539440
TU50703 lncRNA upstream 276517 8493068 ~ 8493304 (-) True G42894
TU50741 lncRNA upstream 334579 8551130 ~ 8551355 (-) True G42914
XM_026945007.2 mRNA downstream 11953 8083051 ~ 8123270 (-) True dok7
XM_034301237.1 mRNA downstream 65899 8053494 ~ 8069324 (-) True LOC117596360
XM_026942712.2 mRNA downstream 225249 7907228 ~ 7909974 (-) True adra2c
XM_026943559.2 mRNA downstream 305677 7826634 ~ 7829546 (-) True hmx1
XM_026943612.2 mRNA downstream 309747 7823130 ~ 7825476 (-) True hmx4
XM_026933693.2 mRNA upstream 4048 8220599 ~ 8270117 (-) False htt
XM_026933683.2 mRNA upstream 4048 8220599 ~ 8270117 (-) True htt
XM_026933702.2 mRNA upstream 5547 8222098 ~ 8270117 (-) False htt
XM_026934785.2 mRNA upstream 254979 8471530 ~ 8479019 (-) True tmem132a
XM_026935185.2 mRNA upstream 266752 8483303 ~ 8492983 (-) True LOC113539440
XR_004577908.1 other downstream 931072 7161474 ~ 7204151 (-) False lef1
XR_004577909.1 other downstream 931072 7161474 ~ 7204151 (-) False lef1
XR_004577821.1 other downstream 2315710 5756711 ~ 5819513 (-) False gab1
TU48529 other downstream 2907300 5203706 ~ 5227923 (-) False lsm6
trnam-cau_1 other upstream 250433 8466984 ~ 8467055 (-) True trnam-cau_1
trnam-cau_2 other upstream 251485 8468036 ~ 8468107 (-) True trnam-cau_2
trnam-cau_3 other upstream 252520 8469071 ~ 8469142 (-) True trnam-cau_3
trnam-cau_4 other upstream 253435 8469986 ~ 8470057 (-) True trnam-cau_4
trnae-cuc_7 other upstream 253807 8470358 ~ 8470429 (-) True trnae-cuc_7

Expression Profile