Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU50484 |
| length | 387 |
| lncRNA type | inter_gene |
| GC content | 0.34 |
| exon number | 1 |
| gene id | G42717 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 8551498 ~ 8551884 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU50449 | lncRNA | upstream | 81617 | 8469629 ~ 8469881 (+) | True | trnak-cuu |
| XR_004577904.1 | lncRNA | upstream | 122857 | 8425810 ~ 8428641 (+) | True | LOC117596914 |
| XR_004577895.1 | lncRNA | upstream | 279593 | 8270410 ~ 8271905 (+) | True | LOC117596904 |
| XR_004577894.1 | lncRNA | upstream | 279593 | 8270410 ~ 8271905 (+) | False | LOC117596904 |
| TU50295 | lncRNA | upstream | 327673 | 8219916 ~ 8223825 (+) | True | G42548 |
| TU50485 | lncRNA | downstream | 827 | 8552711 ~ 8553382 (+) | True | G42718 |
| TU50481 | lncRNA | downstream | 59717 | 8611601 ~ 8650995 (+) | True | G42714 |
| TU50545 | lncRNA | downstream | 106341 | 8658225 ~ 8659561 (+) | True | G42763 |
| TU50572 | lncRNA | downstream | 212727 | 8764611 ~ 8767603 (+) | True | G42782 |
| TU50573 | lncRNA | downstream | 217440 | 8769324 ~ 8771063 (+) | True | G42783 |
| XM_026935055.2 | mRNA | upstream | 4760 | 8536839 ~ 8546738 (+) | True | LOC113539337 |
| XM_026935045.2 | mRNA | upstream | 4760 | 8536839 ~ 8546738 (+) | False | LOC113539337 |
| XM_026935228.2 | mRNA | upstream | 17463 | 8530455 ~ 8534035 (+) | True | LOC113539481 |
| XM_026935251.2 | mRNA | upstream | 34268 | 8511977 ~ 8517230 (+) | True | tmem176 |
| XM_026934975.2 | mRNA | upstream | 87059 | 8456731 ~ 8464439 (+) | True | si:ch211-89o9.6 |
| XM_034301424.1 | mRNA | downstream | 66841 | 8618725 ~ 8623407 (+) | True | si:dkey-9i23.8 |
| XM_026934966.2 | mRNA | downstream | 75019 | 8626903 ~ 8634451 (+) | True | si:dkey-9i23.6 |
| XM_026935289.2 | mRNA | downstream | 118914 | 8670798 ~ 8673429 (+) | True | pold4 |
| XM_026934770.2 | mRNA | downstream | 123700 | 8675584 ~ 8712889 (+) | True | si:dkey-28b4.8 |
| XM_026934999.2 | mRNA | downstream | 172024 | 8723908 ~ 8739750 (+) | True | slc43a1b |
| trnak-cuu | other | upstream | 81802 | 8469624 ~ 8469696 (+) | False | trnak-cuu |
| TU50445 | other | upstream | 85186 | 8465747 ~ 8466312 (+) | True | G42685 |
| XR_003404394.2 | other | upstream | 885465 | 7649198 ~ 7666033 (+) | False | naa15b |
| TU49753 | other | upstream | 1330475 | 7203950 ~ 7221023 (+) | True | G42075 |
| XR_003404319.2 | other | upstream | 3194801 | 5263582 ~ 5356697 (+) | False | znf827 |
| TU52056 | other | downstream | 2000375 | 10552259 ~ 10558295 (+) | True | sprn |
| XR_004577889.1 | other | downstream | 2042690 | 10594574 ~ 10608704 (+) | False | LOC113543929 |
| XR_004577793.1 | other | downstream | 2547709 | 11099593 ~ 11171114 (+) | False | dntt |
| trnag-ccc | other | downstream | 3039451 | 11591335 ~ 11591405 (+) | True | trnag-ccc |
| XR_003404598.2 | other | downstream | 3130980 | 11682864 ~ 11726772 (+) | False | LOC113545306 |
