RNA id: TU50649


Basic Information

Item Value
RNA id TU50649
length 2532
lncRNA type intronic
GC content 0.38
exon number 2
gene id G42848
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9012486 ~ 9015041 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCCATACAGGCATTGATGCATGCACCCAGTGGACAATACACTAGTAATTGAATGGTTTTTATGCTCCTCTTTGTAATCCTTCCCTTTCAAGATCAGTCACATGCTGGAAAACACATTCAGTCTAAAATTTAAAGGGAACACgaatttttatgaaaattagTAATCAATTagcaagtaaggaataaaacacgaccaggcatgctgttatattaTTTCCCGATAACCATACAGCCCTAAGTGTTTAATTGTGCCgtgttgtatgtttttaattatcAAAGAACAAATCactctttttgtctgtttatagttatgttcaGTGTTGGAACATTTCCAAAGCAACCTGTTAGAATAGCTATAAAGAGTtgttctcctctctttcttcttaataagacaaaaatactgCAGCGCGTCATGTtgccaagaaactggaaagtccTTCATCCCGAAGACGTTCTGTTTCtgtgctttacctctgactgttagaaagcgctgacactggagactccttcaaaaataAGCCTCTTCTtacagaatacatttttaaatctgtaagtACGGTGTTACTctagaaacgataatgtgttagaacaagcgcattaatataaaaatgtgatttgccatgCAGCTGGGACTGCTGTCAGAGTGGCTCttaagttaatcaacacctcctgaccagtCAGCTTTGAGAATTCAAGAGTTCTGTAGTgtaatttactttaatacacCAGTAGTGTTGCAATAGAATTACACCAGTTTGCAAGAAGATATTTGTGTGTGGGcggtttgatttatttattttttttgttttttctagcTGCCCCATTAGTTAACATAGAAAGAAGTCAGACCTCACAGATACTGAACGGTACTGCTAGGAAGCTGAATACTGACGTATGTAAGCTCCATTTCTTTCCTGTGGTCAGCATTTGAGTGATTGTTTGTTTAACTATTGTACAGTAATATCCAGCCGCAATACATGGAGCAACTGTGGCACTGAGCTCCAATTCAAACCTTATTAGACGTAAGAGTTAGCAGTAACACATAACAATAAGCAGGTCTTTTCAAATTGGAGTCAAATAAGTAAATATCCACATGATTCACAAGaaacaatttgtttttgtttaaaacttCTCTTAAGGCTGGAAATAGAAATCTCTGGAAATGATGGATGAAAATgcagttttgggtttttttttgtttttttttttttttttttttttttttttaaatctacttCAATATGTTTTCAGACCTCTCTCATGGGTCTACTGTCTAAGTGTAGCtgcacatttgtaaatattcaatttacattttctttcctcctgAATGATTCTGCCAACTCTTTATAAAGTTGTACCTCTTTTTCTGGGAAATGGTGGAAGAACACAAACTTTACTTTTCTCCTTTCATAGTTACCACACTCTGTTTGAGTGCTCTGCAGGTCACCTTTAATTAAATTCCTTCTAAATCTCACATCCTGCTCCAAGATTTCCACTAATTACTGCTTGCTCAGGAATCCGTCATACTAGCTGCCTAATGTAGTAATGGACCGCTGACTGAAAGACACACAAATGATACGATAGAATGAGCTGAGAGATTGGGTAATGTGCTACATAACATATGAAATGTTAGTTTTATGCTGGTTAATGCCTTGTTGTTCTGAGTGATGGCCATGTGCTAAAGTACTCGTTCCAGGAAGTCATATGAGAAGCAGGAGTGTCTGACACACTGACCTTTATTTGCTCATAAAAGAGTTTCCTAAGGCATTTCTGGCCTTGTTGAAGatagtgctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatcgcaTGGGTTCAAGATTTATGAGGGCTGTAGAAATCCCTGTGAGCACATCCCTTCTACTTCTACAATGAAGTTCTGAGCAAGCCTAAGCCTCTTAAACACTTCCTTTTGCGTAAAGATATGAGGTGTCTTCTctaatattgcttttttttgctgaatgGCCAGATTATGTAACGTAGGAGAGATCTAAGGTAAATGAAATCAGCTGTGGATTTCTCATCGGCGTGTTTGTTTCATAAATGTCTGTATGCAGCACTCGACTGCTATATTAAAAAAGGTTATTTGAGAAAGTGTGCTCTGTAAGAGTTTGTCGAAATATTGCCACTCCAGCACTGGTGATGGTAAGTCTCACTTGCTGTGACGGACTcgctgaaactggacagttgaagaccgGAAAAACACtaggtgattattttttttttgattatttatttttctgatcttcaactgtccagtttgggtgatagcctcagattcttgttcttggctgacaggagtggaacccagacCATAAGATGCTAAAAGAAATCTCTAAGAACCCCAGAATTTCATCACTGTGTCTGCAAGTATCTTTTGCCACTGTTGATGTCAAAGTGTCTGTCTCTATTATTAGAAAGAGACTGCACAAATCTGACCTGCATGGGAGGTTTGCCAGGAGGAAGCCTTTGCTGtccaaaaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50628 lncRNA upstream 58460 8953522 ~ 8954026 (+) True G42833
TU50585 lncRNA upstream 141560 8812836 ~ 8870926 (+) True G42792
TU50573 lncRNA upstream 241423 8769324 ~ 8771063 (+) True G42783
TU50572 lncRNA upstream 244883 8764611 ~ 8767603 (+) True G42782
TU50545 lncRNA upstream 352925 8658225 ~ 8659561 (+) True G42763
TU50999 lncRNA downstream 209322 9224363 ~ 9224593 (+) True G43137
TU51058 lncRNA downstream 329014 9344055 ~ 9345181 (+) False G43186
TU51055 lncRNA downstream 330389 9345430 ~ 9347236 (+) True G43186
TU51239 lncRNA downstream 473718 9488759 ~ 9488959 (+) True G43330
TU51246 lncRNA downstream 479936 9494977 ~ 9495210 (+) True G43337
XM_034302892.1 mRNA upstream 30613 8968989 ~ 8981873 (+) False si:ch73-109d9.1
XM_026935116.2 mRNA upstream 30613 8968990 ~ 8981873 (+) True si:ch73-109d9.1
XM_026935106.2 mRNA upstream 30613 8968991 ~ 8981873 (+) False si:ch73-109d9.1
XM_026935034.2 mRNA upstream 44556 8963903 ~ 8967930 (+) True si:ch73-109d9.3
XM_026935011.2 mRNA upstream 50794 8956126 ~ 8961692 (+) True si:ch73-109d9.2
XM_026944457.2 mRNA downstream 114938 9129979 ~ 9143030 (+) True cog2
XM_026938999.2 mRNA downstream 137289 9152330 ~ 9211293 (+) False phactr2
XM_026939032.2 mRNA downstream 137294 9152335 ~ 9211293 (+) False phactr2
XM_026939024.2 mRNA downstream 150789 9165830 ~ 9211293 (+) False phactr2
XM_026939016.2 mRNA downstream 162180 9177221 ~ 9211293 (+) False phactr2
trnak-cuu other upstream 542790 8469624 ~ 8469696 (+) False trnak-cuu
TU50445 other upstream 546174 8465747 ~ 8466312 (+) True G42685
XR_003404394.2 other upstream 1346453 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 1791463 7203950 ~ 7221023 (+) True G42075
TU48562 other upstream 3670736 5318534 ~ 5341750 (+) True G41047
TU52056 other downstream 1537218 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 1579533 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 2084552 11099593 ~ 11171114 (+) False dntt
trnag-ccc other downstream 2576294 11591335 ~ 11591405 (+) True trnag-ccc
XR_003404598.2 other downstream 2667823 11682864 ~ 11726772 (+) False LOC113545306

Expression Profile