Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU50701 |
| length | 397 |
| lncRNA type | sense_over |
| GC content | 0.39 |
| exon number | 2 |
| gene id | LOC113539440 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 8483303 ~ 8492983 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU50426 | lncRNA | downstream | 103440 | 8380340 ~ 8380715 (-) | True | G42671 |
| TU50420 | lncRNA | downstream | 184711 | 8299180 ~ 8299444 (-) | True | G42665 |
| TU50402 | lncRNA | downstream | 279750 | 8204197 ~ 8204405 (-) | True | G42650 |
| TU50394 | lncRNA | downstream | 293879 | 8189735 ~ 8190276 (-) | True | G42642 |
| TU50364 | lncRNA | downstream | 336133 | 8141051 ~ 8148022 (-) | False | rgs12b |
| TU50703 | lncRNA | upstream | 7058 | 8493068 ~ 8493304 (-) | True | G42894 |
| TU50741 | lncRNA | upstream | 65120 | 8551130 ~ 8551355 (-) | True | G42914 |
| TU50814 | lncRNA | upstream | 268141 | 8754151 ~ 8754896 (-) | True | G42970 |
| TU50831 | lncRNA | upstream | 281978 | 8767988 ~ 8769186 (-) | True | G42987 |
| TU50844 | lncRNA | upstream | 371248 | 8857258 ~ 8861508 (-) | True | G42994 |
| XM_026934785.2 | mRNA | downstream | 5136 | 8471530 ~ 8479019 (-) | True | tmem132a |
| XM_026933693.2 | mRNA | downstream | 214038 | 8220599 ~ 8270117 (-) | False | htt |
| XM_026933683.2 | mRNA | downstream | 214038 | 8220599 ~ 8270117 (-) | True | htt |
| XM_026933702.2 | mRNA | downstream | 214038 | 8222098 ~ 8270117 (-) | False | htt |
| XM_034303138.1 | mRNA | downstream | 267604 | 8135223 ~ 8216551 (-) | False | rgs12b |
| XM_026935138.2 | mRNA | upstream | 8126 | 8494136 ~ 8505726 (-) | True | vps37c |
| XM_034303159.1 | mRNA | upstream | 67447 | 8553457 ~ 8562707 (-) | False | LOC113539365 |
| XM_026935085.2 | mRNA | upstream | 67447 | 8553457 ~ 8562707 (-) | True | LOC113539365 |
| XM_026935066.2 | mRNA | upstream | 80551 | 8566561 ~ 8573850 (-) | True | LOC113539349 |
| XM_026934742.2 | mRNA | upstream | 96180 | 8582190 ~ 8604478 (-) | False | kdm2aa |
| trnae-cuc_7 | other | downstream | 13726 | 8470358 ~ 8470429 (-) | True | trnae-cuc_7 |
| trnam-cau_4 | other | downstream | 14098 | 8469986 ~ 8470057 (-) | True | trnam-cau_4 |
| trnam-cau_3 | other | downstream | 15013 | 8469071 ~ 8469142 (-) | True | trnam-cau_3 |
| trnam-cau_2 | other | downstream | 16048 | 8468036 ~ 8468107 (-) | True | trnam-cau_2 |
| trnam-cau_1 | other | downstream | 17100 | 8466984 ~ 8467055 (-) | True | trnam-cau_1 |
| XR_003403913.2 | other | upstream | 269859 | 8755869 ~ 8783798 (-) | False | zdhhc5a |
| TU50809 | other | upstream | 315233 | 8801243 ~ 8853794 (-) | True | G42967 |
| TU50810 | other | upstream | 363099 | 8849109 ~ 8853794 (-) | False | G42967 |
| TU51003 | other | upstream | 738871 | 9224881 ~ 9228884 (-) | True | sf3b5 |
| trnag-gcc_1 | other | upstream | 3222604 | 11708614 ~ 11708684 (-) | True | trnag-gcc_1 |
