RNA id: XM_026935185.2


Basic Information

Item Value
RNA id XM_026935185.2
length 1983
RNA type mRNA
GC content 0.37
exon number 7
gene id LOC113539440
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 8483303 ~ 8492983 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGAGCAGTGTGCAGAGAGCAACATTCAAGATGTGGAGATGCACTGTATGGAGAGACTGAGTTAGACAGAGATGATGGGGgaggagaaatgaaaaaaggatAGTTTTAACACCTCTGCCTGTTTCCTTTCGCTTCATTTGGATGTGTTGCTTGCTCTATACattgctttgtgtgtttttcagctAAGTTACTGATGGACCACCTATTGCTGCTGGTGCTCATGCCGGCTGTTCTCGCTGGCGAATCAATTATTGGAAACGGGACTACCACTGAATCCACTCCTGCTCATAATGTTACTAGTTCCATACCTACATGTGCACCCACAATCACCAATAAGCCCAATATTGCGGCACCGCCGCCTGCAGTGGGCAGGATAAAGGTGAAATGGTTGAAGGACAACCAGTGTCAGGGCTTCATATACTTCTCCTTAAATTATACACGACCTGAGAAGTATCTTTGTTTCAATactgattatattataaaatccAATTTGGGTTATGAGTTATGTGAGGAGAGGAGATGTGGAGAGTTCCTTGGCTTCAAGTCCCAGAAGCCCCAGAAGCCCCAGGAGTGGCAAGGTTATACGATCTATGAAAACCTAACTGGTTCCGATGAAAAAGCATGCACTGGAATATACGTTACCTGcaaagATGTAGAAAGCAAAGAACTGGTGGTCTATAAAGTAATAACAGGCTTGTTACTGACACTGATCCTTGCCATCCTTCTCTGTCGATTTGCACAGCCAACATACATAGCTGTCCGCAAGAGATTTTCACAGAAGCAGCAGAATCGTTGGATCGGCCCAACACAGAGCCAGAGTGtgTCCTACCATAGAGGGAAGGCTGGTAATCCCAATAACAATACAACGAAGAGGCAGTCCTATCCTGGTTTGGAAAGACTTTCGGTAAATCCCAGCAGAGAGCCTTCGTCGAACAGGAACAGTGACTACGACTCATATGGCGGTTAAACTCCTCTCGTACAGTGTAGGAGTTtgtgaaaatatttcttttgaaGGCTCTGATGTTGTGTGAAGATCAACATGGTAATCGTAACAGCCGGTCTGATATTAAATTTTGGCaaacaaaataatgtatatttcataGTGTTAGCCAGACTTTTACTTCATCTGCACCCACATGTTCTATCACTATTAATTCATGAATTCATAAATTTGCTACCAATTTATATGTTTTCACTTTTGTTATAACACATAAATTTATAATCTTTCTGATAAACTAGTCCCACAGGGCATactaaatagtttatttattggTTTGCTTTTTTGACCTGAGATTGATTCATAAACCTAACAAAATTGTTCTTTATTTGCTTGTTCTTGCTCTGAATAATTAATAGTCTATTATATTGTCTcttattgttatattgtttaGATTGTATCtattttgattttaattaatgcattCTGTTGTAGAGATTGAATATGTAATGTGATACAGTTTTAATGAAGTGCTTAAATAACTATTTGGTAATGCTTTACTTTAAGGTTTCTGTAACtagcattatttactgcattggTTAACATAAACAAACTATGAACGCcagcattaataaaccataagtACTGTGTATTGATTGATTTTGTTAAATTGTTAACGAAGTACACCTGTATTTACTGTTTCttcaaaataagaaagaaaaataagtcCACATATAttagtaaaaatgaaatgatagcATGATGCTATGTGCTGTCAGCTTCCTGAACTCTGGCCTCCAGGTGTAAATACTGGAACTTGCTTTTCAGCCTCAGTTCTCAATTTGACCAGTTATCAAACACGAACATGTTAACTAAGGTGTTGGTTCATTTTGTTCAGTGTGGGATTCATTTTACACCCTGATGGTATGAACATTGATTTATTCAGGTGTTGAATATTTGGCTTATTTAGTATTTGATTTATTAAGTGTTAGTTATTTTAGGTTTATTCACTAATGTGTTACATAATGTCAGTTAAGTGGATCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50426 lncRNA downstream 102588 8380340 ~ 8380715 (-) True G42671
TU50420 lncRNA downstream 183859 8299180 ~ 8299444 (-) True G42665
TU50402 lncRNA downstream 278898 8204197 ~ 8204405 (-) True G42650
TU50394 lncRNA downstream 293027 8189735 ~ 8190276 (-) True G42642
TU50364 lncRNA downstream 335281 8141051 ~ 8148022 (-) False rgs12b
TU50703 lncRNA upstream 85 8493068 ~ 8493304 (-) True G42894
TU50741 lncRNA upstream 58147 8551130 ~ 8551355 (-) True G42914
TU50814 lncRNA upstream 261168 8754151 ~ 8754896 (-) True G42970
TU50831 lncRNA upstream 275005 8767988 ~ 8769186 (-) True G42987
TU50844 lncRNA upstream 364275 8857258 ~ 8861508 (-) True G42994
XM_026934785.2 mRNA downstream 4284 8471530 ~ 8479019 (-) True tmem132a
XM_026933693.2 mRNA downstream 213186 8220599 ~ 8270117 (-) False htt
XM_026933683.2 mRNA downstream 213186 8220599 ~ 8270117 (-) True htt
XM_026933702.2 mRNA downstream 213186 8222098 ~ 8270117 (-) False htt
XM_034303138.1 mRNA downstream 266752 8135223 ~ 8216551 (-) False rgs12b
XM_026935138.2 mRNA upstream 1153 8494136 ~ 8505726 (-) True vps37c
XM_034303159.1 mRNA upstream 60474 8553457 ~ 8562707 (-) False LOC113539365
XM_026935085.2 mRNA upstream 60474 8553457 ~ 8562707 (-) True LOC113539365
XM_026935066.2 mRNA upstream 73578 8566561 ~ 8573850 (-) True LOC113539349
XM_026934742.2 mRNA upstream 89207 8582190 ~ 8604478 (-) False kdm2aa
trnae-cuc_7 other downstream 12874 8470358 ~ 8470429 (-) True trnae-cuc_7
trnam-cau_4 other downstream 13246 8469986 ~ 8470057 (-) True trnam-cau_4
trnam-cau_3 other downstream 14161 8469071 ~ 8469142 (-) True trnam-cau_3
trnam-cau_2 other downstream 15196 8468036 ~ 8468107 (-) True trnam-cau_2
trnam-cau_1 other downstream 16248 8466984 ~ 8467055 (-) True trnam-cau_1
XR_003403913.2 other upstream 262886 8755869 ~ 8783798 (-) False zdhhc5a
TU50809 other upstream 308260 8801243 ~ 8853794 (-) True G42967
TU50810 other upstream 356126 8849109 ~ 8853794 (-) False G42967
TU51003 other upstream 731898 9224881 ~ 9228884 (-) True sf3b5
trnag-gcc_1 other upstream 3215631 11708614 ~ 11708684 (-) True trnag-gcc_1

Expression Profile