RNA id: TU50882


Basic Information

Item Value
RNA id TU50882
length 1401
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G43029
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9016202 ~ 9017636 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccagtttgggtgagtctgtgcccatgatggcctcagattcctgttcttggctgacagcagtggaTCGCAatgaggtcttctgctgttgtagctcatccacctcaaggtctgatattttgtgcatgctgagatgcttttctgctcaccacggctgtaaagagtgcttatttgagttactatagacttcctgtcagctcagaccagtctgatcattctcctctgatccctctcatcaacaaggtgtttccacccacagaaccgtCGCTCACTCtagaactgttgtgtgtaaaaatccaaggagatcagcagtttctgaaatactcaaaccagcccatctggcaccaacaatcgtgccatgatcaaagtcacagagatcacactttttcttcattctgatgtttgatgacctgtatctgcatgatgttgctgccacatgattggctgactagataactgcataaatgttcaggtgtttctaataaagtggacagtaatTCATTAAGCAGCAGCTCTGTGCTCTTCGTGCTTGGGTGGTTTTTGCTATTTCTATGCACACTTGGAAAAGGCTGTTTTCAATGCTAAATGCCCCTTCTTATGTACAGCGTCAAATTAAACCAAAAGCAtaaattttgctctgattcaaAAGTGTGAAAGCATCCTTACAttcctgagatttgaactcacaccAACTTTTAACTCATAAAGAACCTTACCTGCTGAGCTACTACTATCCGTTTTAATTACAGTCTTTTTAATTTGAGAAGTCAGCTTCATAGATAGTGGATTCATTATTAAtactcatttgtttttattattacaattgCAGCAGACGTTGAATGCATTAAAGTAATGAAGCATGGAAGTTCATGTGCttgggggaaaagaaaaaagaaaaaaaaaaaaaactgttggcTTCTAGGCGCGTATGGCAACAGACGATGGTCACAAGCCATGTGGCATGTCAGATAACCATGAACCTGCCAGGAACAAACAACCAGCAACAGTGTGAGTATTCATTACACAATGCCTTGATCTGTAATCCACAGAAATAAGGGTACAATGTGCATACAACAAACAAAGCTTGAACACTGTTAAAAATACATTGCTCCTATTCTCATAATCCACAACTATAATACTCATCAACTGCTAAACCTAGGAGATAAGAGTTCATTATAACAGCTACAGTATACCTTATACAATACAGTAGTTTTGGGGAGGAATTGGCACTGTTTATGCAATTCCAGGTTCAATACACAGGAAGAGCACACATGCCTTTCTCAAAAAAGCCTATCATTAGAAAAGTGATATGACAGAAGTTGCTATTAATGGTAGTAACGGCAAAACCTGACATCACATTCTTACAGTAATGGTATACACTTACTGGCCATTTTAGAAGGACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50844 lncRNA downstream 154694 8857258 ~ 8861508 (-) True G42994
TU50831 lncRNA downstream 247016 8767988 ~ 8769186 (-) True G42987
TU50814 lncRNA downstream 261306 8754151 ~ 8754896 (-) True G42970
TU50741 lncRNA downstream 464847 8551130 ~ 8551355 (-) True G42914
TU50703 lncRNA downstream 522898 8493068 ~ 8493304 (-) True G42894
TU51072 lncRNA upstream 299792 9317428 ~ 9341922 (-) True G43198
TU51168 lncRNA upstream 365072 9382708 ~ 9412002 (-) True G43270
TU51261 lncRNA upstream 499075 9516711 ~ 9517005 (-) True G43352
TU51431 lncRNA upstream 510880 9528516 ~ 9528727 (-) True G43509
TU51505 lncRNA upstream 741840 9759476 ~ 9760212 (-) True G43569
XM_026934827.2 mRNA downstream 63454 8946682 ~ 8952748 (-) True LOC113539201
XM_034303001.1 mRNA downstream 89865 8909505 ~ 8926337 (-) False cabp2a
XM_034303000.1 mRNA downstream 89899 8909505 ~ 8926303 (-) True cabp2a
XM_034302998.1 mRNA downstream 91007 8909505 ~ 8925195 (-) False cabp2a
XM_026934878.2 mRNA downstream 122424 8868643 ~ 8893778 (-) False ctnnd1
XM_026940775.2 mRNA upstream 80351 9097987 ~ 9129058 (-) True pgbd5
XM_026942296.2 mRNA upstream 126619 9144255 ~ 9148708 (-) True agt
XM_026933661.2 mRNA upstream 207240 9224876 ~ 9228793 (-) False sf3b5
XM_026932135.2 mRNA upstream 226905 9244541 ~ 9268345 (-) True oprm1
XM_026944059.2 mRNA upstream 332424 9350060 ~ 9379729 (-) True pcnx2
TU50809 other downstream 162408 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 162408 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 232404 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 545773 8470358 ~ 8470429 (-) True trnae-cuc_7
trnam-cau_4 other downstream 546145 8469986 ~ 8470057 (-) True trnam-cau_4
TU51003 other upstream 207245 9224881 ~ 9228884 (-) True sf3b5
trnag-gcc_1 other upstream 2690978 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 3127259 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 3507000 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 3513807 12531443 ~ 12534075 (-) False LOC113537616

Expression Profile