RNA id: TU51055


Basic Information

Item Value
RNA id TU51055
length 1807
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G43186
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9344055 ~ 9347236 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTCAATCCTATATATTCAGCTTGCATTTGCTAATTACATAGTTGACTTATTGAGAACACAAAAGACTGTGTGAGTATGTGTTAAAGTACTGCAATATGCAGAATTTGTCCAAtggttttttatttctttctgtctttaagTTGGACTTAGgggtaaatgttttaaaactatAACATGACTTTGAAACCATGATATACCAAAAACCTGGTATTGGTTTTAACTTGAAAATACCACTCCCACTCACAATAGTAGGAATGATTAAAATTCTCTTCATATTAATGagatgattggctgatgctAATAGAAAAAGTTATTCATCCTAAATCATATTATTTAGGAACTATaatgaaactaataggaaaggtaCATAGTTATGAGAATGAAGGTCTGGGACCTGTTGATGAAATTCTCTGACATTTCTGCTCTTTTTGTAGGTGTACAAATGTGAAACTTGTAGTCAAATTGAAAATACTGGTGCTTTTGCTCTGTATAAGCAGTATTTGCAGTACTGTACTTCATAAGCTACATAGCAAACCAACTTTAAGAAATAATTGTAAGTAtctgttaaaaatattatttttaagtaGGTgcttgtacactatatggccactatagtttatggacacctgaccatcacagccatatgtgggccttccccaaactgttttaGACACAAATTTGTAAgctcacaattgtatagaatgacTTTGTATATTGTGCAGAAAGTGATGTCCATGAAgtcatggtttgtcaaggttggagtggaagaactcgagtggcctgcacagagcccagACCTCAACTCCAccaaacacctttgggataaactggaatgccgacttcACACCAGGTCTTCTTATTCAATTGGCACCTAATCTTTtgtgttcttgtggctgaatgatcgcAAAtcagactgcaccccaggcctcctcacccaacatcattgcctgatctcactaatgctcttgtgactgaaatCCCCACatccacactccaaaatctaggggaaagccttcccagaagagtggcggttattataacagcaaagaggagactaactctggaatgggatgttcaaaaagcacatttaggtgtgatggtcaggtgtccaaaaacctttggccatatagtgtatatcagcATACAGGAGGGAGGATTTCCCCAAAATTGtagcatgtactgtatgtggtgtgtgGGAAATAATGGACTGCATGgcaagtgtagtgtagtgcttCTAAATCCTTCATGGAGGATCCTCATGGGCTCTCTTTTGAAAGGCAACTGAATCGGACCTATAAACGAAACCTTCTTTTTGTGAATTATGTAAAGGCTACAGTGATTTCTGATACTCTGGAGTGCATGTTAAAGTGTTCGACGTTGTCATTGTCTGTGTGGGAGGCCAAGCTATTAGCATGCACACGTTTGTTCACAATGTTCCGCTCAGCATAAAGATTAcctttaattatatttaattatattatataacatcCTAAATTGAGGTACGTTTAAGGAAGTGCATTAGTGTAACTCATCATCCACTTACTTTTTTGTTCAATCAGATTCAAATCCAGTGTCATTTTTTGCCTCTGTGGTAAAACCTACTTATTTGttgaattgttgtattgtaCGTCTATCTGAGTTTTAAATATGGGCACCAACATGCATTTTAATGCCAGATGATTTCGTCCGTTCCTCTATAACTGGCCTGTAGTATCTGTGTCTCTAATAATGGTGCAAGGAGGCAATTGCTGACTCATAGCTGTGTatgaaatctgaaaataaaacactttttttcagtGGCACTGA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG:

id description
ko04360 Axon guidance

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51058 lncRNA upstream 249 9344055 ~ 9345181 (+) False G43186
TU50999 lncRNA upstream 120837 9224363 ~ 9224593 (+) True G43137
TU50649 lncRNA upstream 330389 9012486 ~ 9015041 (+) True G42848
TU50628 lncRNA upstream 391404 8953522 ~ 8954026 (+) True G42833
TU50585 lncRNA upstream 474504 8812836 ~ 8870926 (+) True G42792
TU51239 lncRNA downstream 141523 9488759 ~ 9488959 (+) True G43330
TU51246 lncRNA downstream 147741 9494977 ~ 9495210 (+) True G43337
TU51269 lncRNA downstream 179625 9526861 ~ 9527159 (+) True G43360
TU51332 lncRNA downstream 321375 9668611 ~ 9671740 (+) True G43422
TU51561 lncRNA downstream 524310 9871546 ~ 9871819 (+) True G43615
XM_026933348.2 mRNA upstream 6814 9316791 ~ 9338616 (+) True rgs17
XM_026939032.2 mRNA upstream 134137 9152335 ~ 9211293 (+) False phactr2
XM_026942835.2 mRNA downstream 35402 9382638 ~ 9408518 (+) True map3k21
XM_026945162.2 mRNA downstream 73830 9421066 ~ 9487539 (+) True prim2
XM_026938626.2 mRNA downstream 296573 9643809 ~ 9666593 (+) True si:dkey-103j14.5
XM_026944483.2 mRNA downstream 392554 9739790 ~ 9745528 (+) True kifbp
XM_034302989.1 mRNA downstream 416397 9763633 ~ 9772357 (+) True vps26a
trnak-cuu other upstream 875734 8469624 ~ 8469696 (+) False trnak-cuu
TU50445 other upstream 879118 8465747 ~ 8466312 (+) True G42685
XR_003404394.2 other upstream 1679397 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 2124407 7203950 ~ 7221023 (+) True G42075
TU48562 other upstream 4003680 5318534 ~ 5341750 (+) True G41047
TU52056 other downstream 1205023 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 1247338 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 1752357 11099593 ~ 11171114 (+) False dntt
trnag-ccc other downstream 2244099 11591335 ~ 11591405 (+) True trnag-ccc
XR_003404598.2 other downstream 2335628 11682864 ~ 11726772 (+) False LOC113545306

Expression Profile