RNA id: TU51072


Basic Information

Item Value
RNA id TU51072
length 1714
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G43198
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9317428 ~ 9341922 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCATGTTCCATCCAATTTCTTGAAAAACGTCCCTCGACCATCGTCTCTCCCGATCTGACACTTAACATATTTGCATAGGCAAAATGAGATTAGCCCTTAAACAGTGTGTTTCCTGAATCTTTATCTAATTATGctgagtgaaaaaaataaaatcaacaaataaTAGCTACTCTTTGTCAAACCTCAGTATACATGTGCACATGTCATTTACAGTGTTAGGCTTCAAgtagatcaaaaaaaaaaacaaacaaacaaacaaaaaaaagaaaacaaaaacaaattgaactaaatgtgaacaaaaaaaatgcaacatgaGAGGTAGAGGAAACCCAGTGAAATTTTTCCGAGACATGTCAGTCACTACAAAGCTCCTCTGATCACACATGATCTAAGAGTCCATTCCGCATGTTTACAAAAAGGAGCCTTTCAGCAAGAAATGCAGAAAGAGAGTTTCAAACAATGCCATGTTTTGCAACTATCAGTCAACAGCTGGCTGTTCCCTGAGACAGCCTTCAAGCAAAAACTCTTCATCTCCTATGGCAGGATAAAATCATCCAaagcataaaaattaaatgtgtcaATTAATCCATGACATCACACATCAGTTCCTATGTGAACACTAGCTGAAACATTTTAGTATATCCAATATTACTCAGTATCTGAGATACATCAGaattaatctttattttgtctgttCAGTACCTTAAgtaaaatgaacatttacacaattGATTGTTTTTGTCTACTGTGTGTAACAATATAACCTTAGAAATTCATTATtccagtgaataaaaaaaaaatccgtcatggattaatttatcatttttttttttggctcgaacaccaaaacacaaacatctgcagcacactgctctcagcttttaaatattttttatgtgacatatccaaaaaaaaacatccagccaATCATCTCAAACTCTGTGCCCTGCTGACTCATCGCTCACAAACTGCATGGCacactgtttaaatgtaaacGCAGTTCAAGGCCATTACTTCCCAAtgcttcagcattaataaaaaattcaatagaaataaatgtgtattaaatgtaaaataaccaTTAAAAGAGGCTGCATGCTTTAAATTCTAAACTGGTAATATGTGACGTATGCCAACACTAATCAGGGGGATGGCACACGTGGTTTTGTATGAAGAGAAGAGCTTACAATGGCACGCTGAATGTGGGCTTGTaccacttttattaaaaatactcACCATAGACTTTCACTGATATCTAAGAGGCCAAAGCACTTGTACTAACCTAAGATGATTCAACACTGTCACTGATTCCCACTACACGTCTCTCGGCCCCTCCAACAAtagctgtatttttaaaaaatatattaatacacacaaGTTATATTCAGTAAATTTCCCTTATTGTCTTTTGAGTCAGCAAGTTCACGTTTTGAATGAGAAACAAACGCACTCCAATTCAATTCAGGTCCAAATCCTGGAAACGCATGCAAGTTGTTTTTTAGTAAGACGTGTAAAGGCTTGCAGGCTGACCTAGTTCTCTCTTCGCATTGGCTGATGCTGATGTGTGAATCCACTAATGCTATAacagtgattttaaaaatggcatcAGTGCAATGCTGGTTGAGTGACAAAGGTCTTCAGTGAATTATTGTACATCTAGAGATTGGCACTTTAAGTGCTTttccaagcaacaaaaaaaaaaaaaaaaaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50882 lncRNA downstream 299792 9016202 ~ 9017636 (-) True G43029
TU50844 lncRNA downstream 455920 8857258 ~ 8861508 (-) True G42994
TU50831 lncRNA downstream 548242 8767988 ~ 8769186 (-) True G42987
TU50814 lncRNA downstream 562532 8754151 ~ 8754896 (-) True G42970
TU50741 lncRNA downstream 766073 8551130 ~ 8551355 (-) True G42914
TU51168 lncRNA upstream 40786 9382708 ~ 9412002 (-) True G43270
TU51261 lncRNA upstream 174789 9516711 ~ 9517005 (-) True G43352
TU51431 lncRNA upstream 186594 9528516 ~ 9528727 (-) True G43509
TU51505 lncRNA upstream 417554 9759476 ~ 9760212 (-) True G43569
TU51522 lncRNA upstream 419322 9761244 ~ 9761467 (-) True G43586
XM_026932135.2 mRNA downstream 49083 9244541 ~ 9268345 (-) True oprm1
XM_026933661.2 mRNA downstream 88635 9224876 ~ 9228793 (-) False sf3b5
XM_026942296.2 mRNA downstream 168720 9144255 ~ 9148708 (-) True agt
XM_026940775.2 mRNA downstream 188370 9097987 ~ 9129058 (-) True pgbd5
XM_026934827.2 mRNA downstream 364680 8946682 ~ 8952748 (-) True LOC113539201
XM_026944059.2 mRNA upstream 8138 9350060 ~ 9379729 (-) True pcnx2
XM_034303158.1 mRNA upstream 67148 9409070 ~ 9458592 (-) False il22ra2
XM_026945186.2 mRNA upstream 67154 9409076 ~ 9458592 (-) False il22ra2
XM_026945175.2 mRNA upstream 67154 9409076 ~ 9458592 (-) False il22ra2
XM_026945200.2 mRNA upstream 67154 9409076 ~ 9458554 (-) False il22ra2
TU51003 other downstream 88544 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 463634 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 463634 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 533630 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 846999 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 2366692 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 2802973 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 3182714 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 3189521 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 3289891 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile