RNA id: TU51168


Basic Information

Item Value
RNA id TU51168
length 430
lncRNA type sense_over
GC content 0.45
exon number 2
gene id G43270
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9382708 ~ 9412002 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGAtctgcacaGTGCAAAGTATCTCCTACCTGCCCACTCCAGCGGAATAAACCACACAAaccgagcacacacacacacacatacacatgtgtttaacacaaattaaaaagacaacACGTCTTTACTACCTCTGAGTTTCCCACTTTTACGCATCGTGTCGTCTGTTCGACAGAGTAAGCTAGCAGAGTAAGCTAAACGTAGCTCTTTACCAAGTTTACTAATACAGCCGCTGAGTTCACCTGActccacttcacacacacatacacacacacacgtctgaaaACACAGCACAAACTTTGTGTTCCGTCTCACAATAAAAACACCGGGGCTCAAGTGAAAATCCGAAGCTCCAAAATTCGAGTAAAAGCGAGTAGTTTAAGTGCAGAGAGTCCCAGAAGTCCAGTAACTTGGCGGAGAAACTCGGCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51072 lncRNA downstream 40786 9317428 ~ 9341922 (-) True G43198
TU50882 lncRNA downstream 365072 9016202 ~ 9017636 (-) True G43029
TU50844 lncRNA downstream 521200 8857258 ~ 8861508 (-) True G42994
TU50831 lncRNA downstream 613522 8767988 ~ 8769186 (-) True G42987
TU50814 lncRNA downstream 627812 8754151 ~ 8754896 (-) True G42970
TU51261 lncRNA upstream 104709 9516711 ~ 9517005 (-) True G43352
TU51431 lncRNA upstream 116514 9528516 ~ 9528727 (-) True G43509
TU51505 lncRNA upstream 347474 9759476 ~ 9760212 (-) True G43569
TU51522 lncRNA upstream 349242 9761244 ~ 9761467 (-) True G43586
TU51523 lncRNA upstream 349611 9761613 ~ 9761812 (-) True G43587
XM_026944059.2 mRNA downstream 2979 9350060 ~ 9379729 (-) True pcnx2
XM_026932135.2 mRNA downstream 114363 9244541 ~ 9268345 (-) True oprm1
XM_026933661.2 mRNA downstream 153915 9224876 ~ 9228793 (-) False sf3b5
XM_026942296.2 mRNA downstream 234000 9144255 ~ 9148708 (-) True agt
XM_026940775.2 mRNA downstream 253650 9097987 ~ 9129058 (-) True pgbd5
XM_026934431.2 mRNA upstream 114938 9526940 ~ 9630009 (-) False khdrbs2
XM_026934453.2 mRNA upstream 118168 9530170 ~ 9630009 (-) False khdrbs2
XM_026934421.2 mRNA upstream 118168 9530170 ~ 9630009 (-) False khdrbs2
XM_026934445.2 mRNA upstream 118168 9530170 ~ 9630009 (-) False khdrbs2
XM_026934461.2 mRNA upstream 135795 9547797 ~ 9630009 (-) False khdrbs2
TU51003 other downstream 153824 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 528914 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 528914 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 598910 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 912279 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 2296612 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 2732893 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 3112634 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 3119441 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 3219811 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile