RNA id: TU51261


Basic Information

Item Value
RNA id TU51261
length 295
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G43352
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9516711 ~ 9517005 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACCAATACAAAGAAAGGATTTTTAGAAATCTTGGCCAACTGAAAAGTATGAACATGAAAAGTATGAGCATGTACAGCACTCAATACTTAGTTGGGGCTCCTTTTGCCTGAATTACTGCAGCAATGCGGCGTGGCATGGAGTCGATCAGTCTGTGGCACTGCTCAGGTGTTATGAGAGCCCAGGTTGCTCTGATAGTGGCCTTCAGCTCTTCTGCATTGTTGGGTCTGGCATATCGCATCTTCCTCTTCACAATACCCCATACATTTTctatggggttaaggtcaggcgAGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51168 lncRNA downstream 104709 9382708 ~ 9412002 (-) True G43270
TU51072 lncRNA downstream 174789 9317428 ~ 9341922 (-) True G43198
TU50882 lncRNA downstream 499075 9016202 ~ 9017636 (-) True G43029
TU50844 lncRNA downstream 655203 8857258 ~ 8861508 (-) True G42994
TU50831 lncRNA downstream 747525 8767988 ~ 8769186 (-) True G42987
TU51431 lncRNA upstream 11511 9528516 ~ 9528727 (-) True G43509
TU51505 lncRNA upstream 242471 9759476 ~ 9760212 (-) True G43569
TU51522 lncRNA upstream 244239 9761244 ~ 9761467 (-) True G43586
TU51523 lncRNA upstream 244608 9761613 ~ 9761812 (-) True G43587
TU51524 lncRNA upstream 245292 9762297 ~ 9762556 (-) True G43588
XM_034303158.1 mRNA downstream 58119 9409070 ~ 9458592 (-) False il22ra2
XM_026945186.2 mRNA downstream 58119 9409076 ~ 9458592 (-) False il22ra2
XM_026945175.2 mRNA downstream 58119 9409076 ~ 9458592 (-) False il22ra2
XM_026945200.2 mRNA downstream 58157 9409076 ~ 9458554 (-) False il22ra2
XM_026945192.2 mRNA downstream 102814 9409076 ~ 9413897 (-) True il22ra2
XM_026934431.2 mRNA upstream 9935 9526940 ~ 9630009 (-) False khdrbs2
XM_026934453.2 mRNA upstream 13165 9530170 ~ 9630009 (-) False khdrbs2
XM_026934421.2 mRNA upstream 13165 9530170 ~ 9630009 (-) False khdrbs2
XM_026934445.2 mRNA upstream 13165 9530170 ~ 9630009 (-) False khdrbs2
XM_026934461.2 mRNA upstream 30792 9547797 ~ 9630009 (-) False khdrbs2
TU51003 other downstream 287827 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 662917 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 662917 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 732913 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 1046282 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 2191609 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 2627890 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 3007631 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 3014438 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 3114808 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU560629 True 503 lncRNA 0.41 1 CI01000340 3514465 ~ 3514967 (-)
eurasian perch (Perca fluviatilis) TU154771 True 303 lncRNA 0.48 1 NC_053122.1 15068149 ~ 15068451 (+)