RNA id: TU51332


Basic Information

Item Value
RNA id TU51332
length 3024
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G43422
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9668611 ~ 9671740 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTCAACCTTTTCTGAGAGGGAAAGCCTCTCTTGTAGGAACAAAGCAAAGAATAATTGAGGATGTTTAAAATAACCGAGCAAGAAAAGTCAATGAGAAAATCAGACCAGTCAAAagctttaatacattttattaaatattgcatAATAATGAAATCACAGCAGTAAATAGCGTGTTTAAATCCAACATTCTATCTGTAACTGCACCGCAAATAAAGGAAAACAACATCTAACTGCAATGTGAGCCTCTGCGTGTGGAAGATCACTACAGGCATTATGTCACACTCTTTATGAATATGTCCAGCGATTGCAGTCAGGATCTTGGTAATTGTCTCCTGTGACACACTTGTGGTAGAGCATCATATCCTACAAAGTAACACGGATTTCCTTCTCAATGTaggcaaaatgaaaaaaacaaaaacgaaaaACGAGGCACGGTTAACAAAGCTGTGAGACAAAAGGCATCTGGATCCTAACACAGTGTTAGAAAtctgtcattcattcatatcaGAGCGTGTGCACCAAAAGCAACTCACTGTGCTTTCCTAAATCTCTTCCTGTAATATAAACTATATTCCTAGAGGCTGTTGTGActtcaaacattttattcatttatactaTACATATTTACAAGTACAATTCTTTCGTCTCTGCTTATGTCCAAAGCACAGGATTCTCAAGACACTATATTCTTTTGCTTATCTTGTATATCGCATGATGTTTCATGCACTTGAATGGAATAAAGCTGTGATGAATTTTAAAACCTATGTGAATCTAATCAGGGTCTTGGTTGGTTAAAATTTGATGATAACCGCTGCCAGACAATGATATATGCTATATATGATATTATTAACCAGGAATATGATAAATACTGAATGCGGATCTGTTAGGAGCCCAGTTAAACGTGACACACTCCACACATGCTCAGTAGTGACCTCTGTGGCATGATATGGAATGCAATGCACAATAATACAGGGAGCAAAAGTATTCAGCCGTCATTAGCTCATTAGCTCATTAGCTTAAATACTTTATGGCTGTCAGAGGTGCAACACTGTGTAGAAATTCGTGCATGGTATGTTCTTCATATCAGGTCTAGTTAGCGatcatttctttttcctcttgttCAATCTCCACCAAACTGGAAATGCAGCTACAGCAGAAGTAACTAAACTATCATAAATAGCTTGTCAGTTTACTATACAGATAAAAAAGATCCTAATGTAGCTTACTCATATAAATGGCACTTAAGATAGAAAGGAAGGAGGTACGGCATTTCATACAGATCAGAAATTTCCCCAAAACTTTTGCAGTCACACCAGGATTAAAGTTCTATAAACCCATGTTAATGCATGCTGTCCTTCACGTTCCCAGCTTtcgaaagagaaaaaaatgcatttagatATATATCACACAGGCCTGTGAGGTACAGCAACATATTAAGGTAATCATATGTGCTCGTAGGAGGACCAGTCTCATCCACGTCATATTTTCAGATTTAGGAAAATAAGAATATTTCAAGAATAATTTGAAATATTACAAGAATAATGATAAAATGACCTGTATTTACAGTGCCTTATATTACTCAACTGGTTCCTAAAATAGCCTCTATAGTcctaaaatattcattttattcccTGTTCTCTATTAatgtttaaacttctttttttaattttcaataataCTTTACCTTTTACCTTGTGAggtctagttttttttttttctgatttttttgatTCTCCTAGCAGCACTTTTTCCTACCTCTTGTTTGACCCTAACACTGCTGTAGCACATGAGCCAATGGAATACATActagtcaaaagtttggacactaGATTGGATATATTTTTCACAGTATTAAAGATATTTTGGATAAAGGTCCTTAATGAAGCTGGTTGAGATGATGCCAAGGCGcatcaggaatactgttaagGATGTAAAAtatagttttgatttgttttatacTTTTCTTATTCATGGTATAATTCCATATGTTGTTTCactatgttatttttttttttcattattatttgaaaatagTATTAAAATTGAGAAAAGCTTTATGTGAGCAGGTCTGTCCTCACTTTTGActggtattttatttattttaggttGCAAGACTTCCATTGTCTAACTGCACATACCTTATAAAAGGCAAACATTAGTCACACtactaagtgttttattacagttgttCAAATTTATCTGCGGATCTACTGACACCAAAATGAAGCTTAGCATGACTTAGTCATTTACAAAAACGCAGACAATTTTTATGTCTAGTAACAGATTTGTTTCAGTTAGATAAAGGAGGATTAGGACTGCCAATGTGTGAAACGGGAGAGACAATCAAGGAACTgttccttttttgtgtttgtataaaataaaagatgagaGCAATATCAGTCCATGTGGCAGTTCACATCTGAACAGGAACTCAACCGCATCATCTATATTGCTCTCATATGCACAGGGAGTCCGAAACTGATTTTCAAGTTTTATGTAAATCCATCTTTTTTTTGCTGACCTTTGTCCGGTCCTTTAACCTTCAATACTGGTACCCTCCTTTAAGTGCCTTTAACTACACTCTGACCCTTTCCAACACTGGTGCTTCATCTATTTTAGAGTTTTTGCTGTGTTAATGTCAGGTATgtgattcagtaaaaaaaaaatgttatacacTATGGacacaaacatttatatttaaataaaaacaaaatgtaaataacatatATTATATGAAACAATGTGTGAAAGCTGACAAGCTGATCCTCGTAGTTTTACTACAAAATTCTTGCCGACATGCTACAAACCTTACTGATCACATACCTGGACATTCACCTGGGCAAGATACAatactgacagaaaaaaaaaaatcaaacacttGAGTTCATCAGTAACAGTGTCCCACACAGGCCGCTATAAACATAGTGTTAGAATCTCTACATACACATCAGACATTTTCACATATTACAAGTTAACGGCCTTCACGTAGTTCCCTGGGAAGGTGCCGAACTGTTTTGTCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51269 lncRNA upstream 141452 9526861 ~ 9527159 (+) True G43360
TU51246 lncRNA upstream 173401 9494977 ~ 9495210 (+) True G43337
TU51239 lncRNA upstream 179652 9488759 ~ 9488959 (+) True G43330
TU51055 lncRNA upstream 321375 9345430 ~ 9347236 (+) True G43186
TU51058 lncRNA upstream 323430 9344055 ~ 9345181 (+) False G43186
TU51561 lncRNA downstream 199806 9871546 ~ 9871819 (+) True G43615
TU51592 lncRNA downstream 387786 10059526 ~ 10077649 (+) False G43646
TU51598 lncRNA downstream 399427 10071167 ~ 10072098 (+) True G43651
TU51593 lncRNA downstream 402442 10074182 ~ 10077649 (+) True G43646
TU51610 lncRNA downstream 421995 10093735 ~ 10101531 (+) True G43663
XM_026938626.2 mRNA upstream 2018 9643809 ~ 9666593 (+) True si:dkey-103j14.5
XM_026945162.2 mRNA upstream 181072 9421066 ~ 9487539 (+) True prim2
XM_026942835.2 mRNA upstream 260093 9382638 ~ 9408518 (+) True map3k21
XM_026933348.2 mRNA upstream 329995 9316791 ~ 9338616 (+) True rgs17
XM_026939016.2 mRNA upstream 457318 9177221 ~ 9211293 (+) False phactr2
XM_026944483.2 mRNA downstream 68050 9739790 ~ 9745528 (+) True kifbp
XM_034302989.1 mRNA downstream 91893 9763633 ~ 9772357 (+) True vps26a
XM_034302919.1 mRNA downstream 102192 9773932 ~ 9783035 (+) False supv3l1
XM_026939583.2 mRNA downstream 102608 9774348 ~ 9783035 (+) True supv3l1
XM_026939562.2 mRNA downstream 112766 9784506 ~ 9795574 (+) True hkdc1
trnak-cuu other upstream 1198915 8469624 ~ 8469696 (+) False trnak-cuu
TU50445 other upstream 1202299 8465747 ~ 8466312 (+) True G42685
XR_003404394.2 other upstream 2002578 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 2447588 7203950 ~ 7221023 (+) True G42075
TU48562 other upstream 4326861 5318534 ~ 5341750 (+) True G41047
TU52056 other downstream 880519 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 922834 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 1427853 11099593 ~ 11171114 (+) False dntt
trnag-ccc other downstream 1919595 11591335 ~ 11591405 (+) True trnag-ccc
XR_003404598.2 other downstream 2011124 11682864 ~ 11726772 (+) False LOC113545306

Expression Profile