RNA id: TU51593


Basic Information

Item Value
RNA id TU51593
length 3384
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G43646
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10059526 ~ 10077649 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCTTGTACATTTCTGGCAGCTAAAACAACACTAATAATATTAGACTAGTGCATATGGTAAAccagggatttaaaaaaaaaattagctaatGGAAATGCATTCATAGAGGCTAACACATAACTTACTAAGCCCTTTTCCCTCCAGATATTACACATCTTTAATCATGTTCATATACAGGTTTTCCGTATATGGACAgttgaacagaacagaactccTTGACTACTAACCTCATACTCTGTAGTGTGGAAGTATGCTGTTTGGGACAGAGTGATCAGAACCGTGATTGTTCTGTGCACTGTGATATGAGAATCATCATACAGCCTACAAAACTGATACAATATTCATAGTCatacaaagaaatgaaagaaattccATTCTGAAACTAAATATCATTTATCTGaattaattttagaattttttgtCTCCAACAAATTACAAAAAGATGCTGGACAGGTTACTTGTATGAACCTGACTGCAAAATATAATTGATTTTCTGTGTTGACTACATTAGTGGAATtacagacacattcacacatgaaGGAGGGTATGGTTATCCTACACTTAACCATGACTTTAGTTAAGTTTTATCAAATTAAAACCATCAGTACCAAGAAAATTAGTGGGAAAACACATGTAGagatgtatttattcatttattcatcttcagtaactactttatcctgattagggttgcagtggatctcgggaacactgggcacaaaaAGTGAGAGTATTCACTGTGGATGGGAAGCTAGTCCATCGCAGAGCACCAGtcgcacactcattcacacctacaggcaatttagcatagccaatcctgCATGGTTttacagtgggaggaaaccagagaacccagaggaaacccaaacaAGCACGGGGAGCAGATGAGCAActcagcacagacagtaacctgagctcaggatcgatcccaggaccctgaagctgtgaggctgcAATGCTACCCGCTGCAACACCATGCCACCCCATGTAGACatatactatttaaaaaactgtCAGTGTGCTGGAATGGCAGGCTGTAGCAATGAGACAGGGAATGAAAGGCTTGCATATTCAACTGAGCAactaagaaaaatgtttttgattaaGTACACATACATGATATGATATCCTCTATGTTGAGCAGTTCAGCACTGGATGTGCCCTTCAGAtggcacaaaacaaaaatgtctagAGTAGCCAATCAACTTGAAAACTGTATCTATGTTAGAGTACACTAAGCATCTCAACACATTGAGTTATTCCAatttttaaaccatttgttACAATCCACAAATGTTGCATGACAGAGAAATGGTAGCTCACTGTAAACCCTGTAGTGAGACAATTAGTATTTCAATAGTATTACGACAAATAAATATATGGagaaaatgtacacaatatttGAACGTTTCTGTGATGTTCCTGCACACATCCCCATGGTTTCAAACTGTCTCTACATACACAGCTACATAACATTACGTTACTTTTAAATACACCAGTTAAGTAAAGATGACCGAACCGTGTTAAGGTGATCATTTGCCTTAAACCATTTGTGTAGATAATCagttgtgttttctgacactgttcagtaaaaatgtattttttttagagtgGAAAGTATATAAATCCATATATTAAGCCAGGTACACAATTTTACAACAGTAAGTTTTTACAATATTACCTAAATTGGTGTATTGTTTATGGAGTTCATGGTGAAATACACagctaaataattaacagtGAATAAATAACAGGCATGAAAATCAACAAGATAAATCCTCACTCATCTCCAAAAATTGTGTAAAACTATCAACACCAGTCGAGTTCGGCATTACCATTTAATTCGATTTTTCCTGttctttgtatttattcattcatttatcttcagtaagcgctttgtcctggtcagaaTCGTGGGGTATCcagagcctgtcccaggaacactgggtgtgagggaGGAATTCACCCTGAATAAGactccagtccattgcagggcaccacacacacacacacacacacacacgatttagCATAGCcgatccacctaccagcatgtttttcagaggaaaccagagaacccaaatGAAACCCACATGACCAcaaagagaacatgcaaaactctttCTGTTActtcaattaaaaaacaaaagacagacaTTTGGATTTTAGATCAACAGGCCAGATGTGATAAATTATTTGCTATCAGTAGAACtgaaacattatatatacagattCAAACAATCCATGCATTGCCcgtcacacatacacaaaacaaaaataaattaggtATCAAACCAACTCAGCAATAAAACAACTGCACACCAGCCAACTGTTTCAGCCAAGTGACCTCATGGTACCAGTGTTACATTATTATCTCTTAGTTCTCATAAACCTTGatgtatacaaataaagcatcttgtggaaaataaaaactcattaaataaaattattaaggTTCTCTTTGAGGGATTTAAGGCACAGGTACACGGGTACATTTCAGGCATTAACAGATGTAATGTCAACATCAATATTAATATCTGGGCATAAAGAAATCAGGAACACTTTGcttaaaatacatatttcacACCCAGCAACTTTATTTAagttaaaacacattattatacCTCATACCAAGTGTTtctaactaaaataaaaatactaactTGCCTCTCTATAGGCGTGTATTGCATTCATTTACCAATGAAAAATCTACACAATCCACAATCCTAACACAATTAAAGTGAAATATCaaattctatttaaataaaaagctcaatcaataaaataaaactcaatcACCCCGACTAAAATGAGCACATTGCAAACGCAACATGCATGATCATAAAATCAATTCAAGTTCAActgaaatgatatatttttttctcacattgTACACTTAGAGCTCTGAATGTTCACTTCATAGCAAATCGCATTAAATGCATTAAGATGATCTATCTATTCCCAGAGCACACGCTAAATTCACTATAtctgtattaaattaaaacataacattGCATCAACTCACctgttttttaatattagtattagtattaaatatataatatgtaggTTCGGCTGTTTTATTTTTCGGATCCGTATTTAAATTGGTTTCGGATCCTTCTCTAAAAGAGCTCTAACCAATATTAAGGCAAAGGCAGTGACCAGCACGATCACTGTACTCCTGGTGGATTTACACATTGATGGCGTGAGCGTGTTTCTTGCATAAAGGTTTGTCCTTCTTAGAATAGAACGGCTGGCCTTCCAGATTTATATGGCAACCGTACACACAAAGCAGGTGTCATGCCATGTGTGGCCAAGAGCCTCAATAAACTTGTCCCCAGCCTCCACTGGGAAATCACAGCCATGGCACTTAGTGCTGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51598 lncRNA upstream 2084 10071167 ~ 10072098 (+) True G43651
TU51561 lncRNA upstream 202363 9871546 ~ 9871819 (+) True G43615
TU51332 lncRNA upstream 402442 9668611 ~ 9671740 (+) True G43422
TU51269 lncRNA upstream 547023 9526861 ~ 9527159 (+) True G43360
TU51246 lncRNA upstream 578972 9494977 ~ 9495210 (+) True G43337
TU51610 lncRNA downstream 16086 10093735 ~ 10101531 (+) True G43663
XR_004577885.1 lncRNA downstream 83850 10161499 ~ 10163956 (+) True LOC117596896
TU51883 lncRNA downstream 164408 10242057 ~ 10247035 (+) True G43905
XR_004577629.1 lncRNA downstream 240772 10318421 ~ 10323264 (+) True LOC117596582
XR_004577630.1 lncRNA downstream 240772 10318421 ~ 10323227 (+) False LOC117596582
XM_026936595.2 mRNA upstream 38792 10016483 ~ 10035390 (+) True mmrn2a
XM_026933386.2 mRNA upstream 79792 9976131 ~ 9994390 (+) True glud1a
XM_034303032.1 mRNA upstream 130194 9909353 ~ 9943988 (+) True psda
XM_034303034.1 mRNA upstream 167789 9904065 ~ 9906393 (+) True LOC117596887
XM_026934229.2 mRNA upstream 181810 9879541 ~ 9892372 (+) False rufy2
XM_026933156.2 mRNA downstream 450728 10528377 ~ 10540040 (+) True si:dkey-191g9.5
XM_026932587.2 mRNA downstream 464961 10542610 ~ 10550191 (+) True si:dkey-191g9.7
XM_026937942.1 mRNA downstream 477931 10555580 ~ 10555993 (+) False sprn
XM_034302755.1 mRNA downstream 495503 10573152 ~ 10588115 (+) True dna2
XM_026936631.2 mRNA downstream 495503 10573152 ~ 10588115 (+) False dna2
trnak-cuu other upstream 1604486 8469624 ~ 8469696 (+) False trnak-cuu
TU50445 other upstream 1607870 8465747 ~ 8466312 (+) True G42685
XR_003404394.2 other upstream 2408149 7649198 ~ 7666033 (+) False naa15b
TU49753 other upstream 2853159 7203950 ~ 7221023 (+) True G42075
TU48562 other upstream 4732432 5318534 ~ 5341750 (+) True G41047
TU52056 other downstream 474610 10552259 ~ 10558295 (+) True sprn
XR_004577889.1 other downstream 516925 10594574 ~ 10608704 (+) False LOC113543929
XR_004577793.1 other downstream 1021944 11099593 ~ 11171114 (+) False dntt
trnag-ccc other downstream 1513686 11591335 ~ 11591405 (+) True trnag-ccc
XR_003404598.2 other downstream 1605215 11682864 ~ 11726772 (+) False LOC113545306

Expression Profile