Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU51677 |
| length | 394 |
| lncRNA type | inter_gene |
| GC content | 0.50 |
| exon number | 1 |
| gene id | G43724 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 9914585 ~ 9914978 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU51676 | lncRNA | downstream | 876 | 9913340 ~ 9913709 (-) | True | G43723 |
| TU51675 | lncRNA | downstream | 1710 | 9912651 ~ 9912875 (-) | True | G43722 |
| XR_003404277.2 | lncRNA | downstream | 108355 | 9782665 ~ 9806230 (-) | True | LOC113542224 |
| TU51524 | lncRNA | downstream | 152029 | 9762297 ~ 9762556 (-) | True | G43588 |
| TU51523 | lncRNA | downstream | 152773 | 9761613 ~ 9761812 (-) | True | G43587 |
| TU51678 | lncRNA | upstream | 213 | 9915191 ~ 9915802 (-) | True | G43725 |
| TU51679 | lncRNA | upstream | 1703 | 9916681 ~ 9916900 (-) | True | G43726 |
| TU51681 | lncRNA | upstream | 4997 | 9919975 ~ 9920200 (-) | True | G43728 |
| TU51702 | lncRNA | upstream | 84981 | 9999959 ~ 10008449 (-) | False | sncga |
| TU51701 | lncRNA | upstream | 85006 | 9999984 ~ 10008561 (-) | True | sncga |
| XM_026934239.2 | mRNA | downstream | 11673 | 9897237 ~ 9902912 (-) | True | hnrnph3 |
| XM_026942068.2 | mRNA | downstream | 86332 | 9816288 ~ 9828253 (-) | False | tacr2 |
| XM_026942060.2 | mRNA | downstream | 86332 | 9816288 ~ 9828253 (-) | True | tacr2 |
| XM_026944230.2 | mRNA | downstream | 179378 | 9723581 ~ 9735207 (-) | True | pik3ap1 |
| XM_026944114.2 | mRNA | downstream | 194692 | 9668721 ~ 9719893 (-) | False | LOC113544990 |
| XM_026939846.2 | mRNA | upstream | 29262 | 9944240 ~ 9959459 (-) | False | nfkb2 |
| XM_026939857.2 | mRNA | upstream | 29262 | 9944240 ~ 9955032 (-) | True | nfkb2 |
| XM_034302934.1 | mRNA | upstream | 46982 | 9961960 ~ 9976011 (-) | False | shld2 |
| XM_034302933.1 | mRNA | upstream | 46983 | 9961961 ~ 9976416 (-) | True | shld2 |
| XM_026933372.2 | mRNA | upstream | 46983 | 9961961 ~ 9976009 (-) | False | shld2 |
| TU51003 | other | downstream | 685701 | 9224881 ~ 9228884 (-) | True | sf3b5 |
| TU50809 | other | downstream | 1060791 | 8801243 ~ 8853794 (-) | True | G42967 |
| TU50810 | other | downstream | 1060791 | 8849109 ~ 8853794 (-) | False | G42967 |
| XR_003403913.2 | other | downstream | 1130787 | 8755869 ~ 8783798 (-) | False | zdhhc5a |
| trnae-cuc_7 | other | downstream | 1444156 | 8470358 ~ 8470429 (-) | True | trnae-cuc_7 |
| trnag-gcc_1 | other | upstream | 1793636 | 11708614 ~ 11708684 (-) | True | trnag-gcc_1 |
| TU53378 | other | upstream | 2229917 | 12144895 ~ 12152506 (-) | False | tmem254 |
| TU53492 | other | upstream | 2609658 | 12524636 ~ 12534075 (-) | False | LOC113537616 |
| TU53486 | other | upstream | 2616465 | 12531443 ~ 12534075 (-) | False | LOC113537616 |
| TU53537 | other | upstream | 2716835 | 12631813 ~ 12633015 (-) | False | LOC113539135 |
