Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU51679 |
| length | 220 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 1 |
| gene id | G43726 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 9916681 ~ 9916900 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko04974 | Protein digestion and absorption |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU51678 | lncRNA | downstream | 879 | 9915191 ~ 9915802 (-) | True | G43725 |
| TU51677 | lncRNA | downstream | 1703 | 9914585 ~ 9914978 (-) | True | G43724 |
| TU51676 | lncRNA | downstream | 2972 | 9913340 ~ 9913709 (-) | True | G43723 |
| TU51675 | lncRNA | downstream | 3806 | 9912651 ~ 9912875 (-) | True | G43722 |
| XR_003404277.2 | lncRNA | downstream | 110451 | 9782665 ~ 9806230 (-) | True | LOC113542224 |
| TU51681 | lncRNA | upstream | 3075 | 9919975 ~ 9920200 (-) | True | G43728 |
| TU51702 | lncRNA | upstream | 83059 | 9999959 ~ 10008449 (-) | False | sncga |
| TU51701 | lncRNA | upstream | 83084 | 9999984 ~ 10008561 (-) | True | sncga |
| TU51739 | lncRNA | upstream | 99518 | 10016418 ~ 10017028 (-) | True | G43775 |
| TU51710 | lncRNA | upstream | 104667 | 10021567 ~ 10024042 (-) | True | G43752 |
| XM_026934239.2 | mRNA | downstream | 13769 | 9897237 ~ 9902912 (-) | True | hnrnph3 |
| XM_026942068.2 | mRNA | downstream | 88428 | 9816288 ~ 9828253 (-) | False | tacr2 |
| XM_026942060.2 | mRNA | downstream | 88428 | 9816288 ~ 9828253 (-) | True | tacr2 |
| XM_026944230.2 | mRNA | downstream | 181474 | 9723581 ~ 9735207 (-) | True | pik3ap1 |
| XM_026944114.2 | mRNA | downstream | 196788 | 9668721 ~ 9719893 (-) | False | LOC113544990 |
| XM_026939846.2 | mRNA | upstream | 27340 | 9944240 ~ 9959459 (-) | False | nfkb2 |
| XM_026939857.2 | mRNA | upstream | 27340 | 9944240 ~ 9955032 (-) | True | nfkb2 |
| XM_034302934.1 | mRNA | upstream | 45060 | 9961960 ~ 9976011 (-) | False | shld2 |
| XM_034302933.1 | mRNA | upstream | 45061 | 9961961 ~ 9976416 (-) | True | shld2 |
| XM_026933372.2 | mRNA | upstream | 45061 | 9961961 ~ 9976009 (-) | False | shld2 |
| TU51003 | other | downstream | 687797 | 9224881 ~ 9228884 (-) | True | sf3b5 |
| TU50809 | other | downstream | 1062887 | 8801243 ~ 8853794 (-) | True | G42967 |
| TU50810 | other | downstream | 1062887 | 8849109 ~ 8853794 (-) | False | G42967 |
| XR_003403913.2 | other | downstream | 1132883 | 8755869 ~ 8783798 (-) | False | zdhhc5a |
| trnae-cuc_7 | other | downstream | 1446252 | 8470358 ~ 8470429 (-) | True | trnae-cuc_7 |
| trnag-gcc_1 | other | upstream | 1791714 | 11708614 ~ 11708684 (-) | True | trnag-gcc_1 |
| TU53378 | other | upstream | 2227995 | 12144895 ~ 12152506 (-) | False | tmem254 |
| TU53492 | other | upstream | 2607736 | 12524636 ~ 12534075 (-) | False | LOC113537616 |
| TU53486 | other | upstream | 2614543 | 12531443 ~ 12534075 (-) | False | LOC113537616 |
| TU53537 | other | upstream | 2714913 | 12631813 ~ 12633015 (-) | False | LOC113539135 |
