RNA id: TU51707


Basic Information

Item Value
RNA id TU51707
length 1508
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G43749
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10030568 ~ 10032075 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAATTCGCTGTGCTTTATTTCTTACCTGCCGTTTCAAGTGATGTATCCCGCTTGCTGCGCTGTGCACCTCTTGTATCTGCTCTCTCCTTATGCTTCTTTCTTTGAAGTTTggattcttttttcttcattaatgcAGACAATTTTTCCAAATCTACTTTCACTTCAGACTCTGTTAGACCTCCAGTATTACTGAAAACGCTGTTGAAAATCGTGAGATGATCGTCAAGGCTCTTGCGCACATGTGTCAACTCGGCTTGCAGTTTTCCCTCTACATCTCTGGAAGCGGCACCTTTGGTACAGTCGCAGCAGGATGGACATTGCTGTTCTCCAAGTTTGACGACACGTGCTTGAAGCTGTTCCACTGTTTTTTCCAAAGCAAAGAAGTCTTTATAAGCTCTAGAGTCCTCTGAGAAATGGTCAAATTTCTGTTCCTTTTGTCTCCTTTTGAGATCCTCTGCCAGCTCCATTGGTTCATCTGCAGTGGGATCTTCAGAGTTAAGCATGGAGGCCAGGCTTCGGCTGTGTCCGTTAATCTGTTCCTGCAGGTCGCTGATCAGCATCTTCAGCACAGGGATGGAGTAGGTTTTCTGGTCTTGTGGGGACCAGTCCATAAACTCCAAAACCTCTTCACCAAGGAGGATTTCCAGTACATCAGTATGACGTATGGCATCTTTCAACAGAGAGCTGAAAAGAGTTGAACAGGCGTTTTATCTCGCCAGATTTCTGACTGTCCTTTTGCTGTAGAGCTTCAACATCTTTTTGACTGCCTGAAAGTGAGGTCTGGAGTATGGTTAAGTTTTGTTGCAGTGTTCTGCGCTTCTCTTGCTCAAGCGCCAGTGAGTTCTGCACAGTGTGTAAGCCTAATTTTATCTCTTCCACTGGTGGGCCCCATCCATCATTTTCCCAAATGTTTAACCTCTCTTCTGCTGCACTGTCTAGAGCGAGCCTGTTTTCATTTGCAATCACTGTTATATTAGATACTGCCTGTTTCAACTGCGCCACAGTTGTGCTAAGGCCAGTACAGTCACAATTTCTGCTACCGGAGCTCATGTTCTTATAGAACTGTGTGTACAAATAGTCCGTATCTATCTCCAGGTCCTGGACTGTGCTTTGGAGAATGGAGACATTTTTTGACAGGTCATCAGCATATTTTCCAACTGCCTCCTTTGCCGCATCCACTTCTAGGAAAGCCTCAATGTATCTGTCCTCATTCTTGCGGTCATTCTGGATTACACGCTCCTCTAAGGTCTTCCAGCCCTTTTGCAAGTGTTCTATTTTTTCTGACACTTGGACTTGGTGTTTGTTTAGGGCACTGAACTGTATAGTGTTATTGACCACCTTATTGTCCAGACGGGTAATGGCTTCCCAGACTGCTGTGTCATCTTGAGGCTGTCTACCAGGACTTGGTGTCTGACTTGCAAGTGTCAAAACTCTCTGGATCTCCTCCTCTAACTGCTCTTGTTTCTCTCTTGCCTCTGATAGTGAGGAATTTAGGGAATGGAGACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51746 lncRNA downstream 1359 10028411 ~ 10029209 (-) True G43782
TU51745 lncRNA downstream 2753 10027604 ~ 10027815 (-) True G43781
TU51743 lncRNA downstream 4099 10026269 ~ 10026469 (-) True G43779
TU51710 lncRNA downstream 6526 10021567 ~ 10024042 (-) True G43752
TU51739 lncRNA downstream 13540 10016418 ~ 10017028 (-) True G43775
TU51751 lncRNA upstream 83860 10115935 ~ 10116716 (-) True G43787
TU51754 lncRNA upstream 95339 10127414 ~ 10127631 (-) True G43790
TU51773 lncRNA upstream 126854 10158929 ~ 10161502 (-) True opn4a
TU51888 lncRNA upstream 209866 10241941 ~ 10242882 (-) True G43910
TU51966 lncRNA upstream 221649 10253724 ~ 10253938 (-) True G43978
XM_026944892.2 mRNA downstream 22033 9999991 ~ 10008535 (-) False sncga
XM_026933400.2 mRNA downstream 33923 9994621 ~ 9996645 (-) True zgc:193505
XM_034302933.1 mRNA downstream 54152 9961961 ~ 9976416 (-) True shld2
XM_034302934.1 mRNA downstream 54557 9961960 ~ 9976011 (-) False shld2
XM_034302697.1 mRNA upstream 3413 10035488 ~ 10072123 (-) True bmpr1aa
XM_034302698.1 mRNA upstream 3413 10035488 ~ 10060452 (-) False bmpr1aa
XM_034302190.1 mRNA upstream 44214 10076289 ~ 10128979 (-) False ldb3a
XM_034302186.1 mRNA upstream 44214 10076289 ~ 10123059 (-) False ldb3a
XM_026945320.2 mRNA upstream 44214 10076289 ~ 10122981 (-) False ldb3a
TU51003 other downstream 801684 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 1176774 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1176774 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 1246770 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 1560139 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 1676539 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 2112820 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 2492561 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 2499368 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 2599738 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile