RNA id: TU51710


Basic Information

Item Value
RNA id TU51710
length 1704
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G43752
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10021567 ~ 10024042 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTCATGCCTTTGGTTTTGGcatgggcacatatgggtgtcattgTCAGATATCCACAtgtttttggccatatagtgtatccaGTCATGGAATTGAAAAAGGGTGTACTTTTTTCCTCATCCTTGTGCTGCCAGGTTATTAGGTATGCCGAGCAAGTAACAAATAAACCAGCAATTTGTATTTTCTGGACTTAAAGCCCACCTTAGGATATTACCCTCCCTAACTTTTAGCCTTTCAAAGATTCTTGGGAACTTTTGAATATGTCCACCTGAAATAATAATTCCTTACATAGCAGAGTTTTAAATCCAGCACTTACCGCCTCTCTCATAATGAGGCTTATGGCCAGTGTGTTGGCTTGGAGTGTAGTCATAGCTGTGCTCTTCTTCCGTTTGGTTCTCCTCAGACCTCAGGGACTCATATAGCGAACGCCTGGACTCTTGATGGTCATTCTGCTCCTGGTTTTGGTGGTGGGTTAGCATCTCAGTCCTGTATCGTTGAGCTCTGGACCTCCTGGATGAAGCCTGATGTCAGTATTGGAGATTTCAGAGACATGGCCGTTTTCCACTGGAGGACAGAAAAGATACAAAAGGTGAATTGGTTTCTCGCCtaagttttctgtaaacatGACCCCTTTCCACTAGATCAGCTAAGGGCTATTTTAAAGGCCAAAAGAAATATGGTCTAAATTAGCTGTTGAAAGATGGTCACAACATTGACTTTTGGAAGTGTTCAAACAAGAGCACAAGACTGGCTTGAAGTGCATCCAGAATGTCATGACTTTATCAGTGCTAAAGTAAAACATTGTCAAAGACTGACAGGTTTTGAAGTTTTACTGAACAGtatgctgttattatttttatttttaatctagaaccacaatttaattaaaatttattattcttCTGTGACCATGTAGTACCAATATCCTCGCAGTTCTCTCCACCATGACCAGGGCAACATCTCCACAAGAGTGCTGTGAAGATCTTCTGCTTCTCTCTGTACACCGGCCGAGTAGACAGCTTGTACCTACatagcaaaaacacacataataatgTTATTGTCAATTGTATTTGCAGTATTTGGGATTAACACCACAAAAATGGTTTGGATCTCACTCACATGACCAGATGGCAGTCTGGCGTCCCATTAGGGCAGGGACTCTGGGACTTGATAATGTATTTCTCACTACCGCAGGACACTGCCATGGTGACTACACGCTTTTGCACAAATGCACACCAGTTTCTGCAAGAAAACAGCAGTAGTAGAATTAGCCAGATTAAGAGAGAAGGCCCCTAGATgtcaagtgtgtgtggtgcagagGTATTTGATGCCTGGAATAAGGTAATGCCTGGAAAGCTAAACTAAGCCAGTTGAGTGACCTGAGTGAGGGGGTCATGTGAGAGAACTTTAGGGTGTACTGACCAGGCAAGCAGCAGCATTCTGAGTGCTCTGTAGAGGAGATAATGCATGGAGGAATATCAGGAAGTACAGACTTGCAATATTGGAAATTAGAGCTCGTTTGAGAATTAGGTTTCCGtagttaataaatattacattcctcagatgatgtgaggaagaaTTCTGGAAGATCTGTGTGTGTTGGATGGACTTTAAGGACATAACAAGAGTTTTGTATTCTTGATCCAAAGTGTGATGGCCTGGGAAAACTTGACAGATGTTGCTGTCTAAAGTCTGGGAATCAGc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51739 lncRNA downstream 4539 10016418 ~ 10017028 (-) True G43775
TU51701 lncRNA downstream 13006 9999984 ~ 10008561 (-) True sncga
TU51702 lncRNA downstream 13118 9999959 ~ 10008449 (-) False sncga
TU51681 lncRNA downstream 101367 9919975 ~ 9920200 (-) True G43728
TU51679 lncRNA downstream 104667 9916681 ~ 9916900 (-) True G43726
TU51743 lncRNA upstream 2227 10026269 ~ 10026469 (-) True G43779
TU51745 lncRNA upstream 3562 10027604 ~ 10027815 (-) True G43781
TU51746 lncRNA upstream 4369 10028411 ~ 10029209 (-) True G43782
TU51707 lncRNA upstream 6526 10030568 ~ 10032075 (-) True G43749
TU51751 lncRNA upstream 91893 10115935 ~ 10116716 (-) True G43787
XM_026944892.2 mRNA downstream 13032 9999991 ~ 10008535 (-) False sncga
XM_026933400.2 mRNA downstream 24922 9994621 ~ 9996645 (-) True zgc:193505
XM_034302933.1 mRNA downstream 45151 9961961 ~ 9976416 (-) True shld2
XM_034302934.1 mRNA downstream 45556 9961960 ~ 9976011 (-) False shld2
XM_034302697.1 mRNA upstream 11446 10035488 ~ 10072123 (-) True bmpr1aa
XM_034302698.1 mRNA upstream 11446 10035488 ~ 10060452 (-) False bmpr1aa
XM_034302190.1 mRNA upstream 52247 10076289 ~ 10128979 (-) False ldb3a
XM_034302186.1 mRNA upstream 52247 10076289 ~ 10123059 (-) False ldb3a
XM_026945320.2 mRNA upstream 52247 10076289 ~ 10122981 (-) False ldb3a
TU51003 other downstream 792683 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 1167773 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1167773 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 1237769 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 1551138 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 1684572 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 2120853 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 2500594 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 2507401 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 2607771 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile