RNA id: TU51739


Basic Information

Item Value
RNA id TU51739
length 611
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G43775
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10016418 ~ 10017028 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTGTTAGCAAGCAGGCTTTGTAGCTTCATGAATGAAGTATCTATATGAATgaacaatgaatgaatggtaGATACTTGCAAAAGAGCACATCATGATACACTTACCCCATGCGTGTTGGATTGTTATTGCTGTAGGTCTCTGCTGAACCATTTTCTGAATCCACAGATAGATCCTCAGATGGATGCCCGTGATTGGGGTTAACATGCCCATGCTCCAGTGGGTAATGTACAGTTTCAGAGACATCAGGGCTTTCTTTATGTGCTCCAGCACTGTGATGACCTGCTCCAAAATGTCCATATTGGTCTCCATGATCCCAATCACCTTGGTGTTGGTGTGGTATGTGCTTTAATTGCTCCTCCTCTCCGTCTTTCAGCTCTTGAGCTCTGGGCCAAACATCAGACCGTGCTGCCAGCAGCAGGCCCTGCAGTAACAGAAACACTTTGACCATGTCTGCTTGCTTCCTCcactaaacacacatacacatgtgtgCTATCTTCCCAGCCTCTGACTCCTCAGTGAGAGCAATAGTTGCTTTAAAGCTGTTGTTGCTTTTTGGACACACCTCCCCATCTCAAAAATCTCTTTTGGTGCCCCCCGCCTCCGATCAGG

Function

GO:

id name namespace
GO:0048738 cardiac muscle tissue development biological_process
GO:0007507 heart development biological_process
GO:0008015 blood circulation biological_process
GO:0003013 circulatory system process biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0005523 tropomyosin binding molecular_function

KEGG:

id description
ko05410 Hypertrophic cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51701 lncRNA downstream 7857 9999984 ~ 10008561 (-) True sncga
TU51702 lncRNA downstream 7969 9999959 ~ 10008449 (-) False sncga
TU51681 lncRNA downstream 96218 9919975 ~ 9920200 (-) True G43728
TU51679 lncRNA downstream 99518 9916681 ~ 9916900 (-) True G43726
TU51678 lncRNA downstream 100616 9915191 ~ 9915802 (-) True G43725
TU51710 lncRNA upstream 4539 10021567 ~ 10024042 (-) True G43752
TU51743 lncRNA upstream 9241 10026269 ~ 10026469 (-) True G43779
TU51745 lncRNA upstream 10576 10027604 ~ 10027815 (-) True G43781
TU51746 lncRNA upstream 11383 10028411 ~ 10029209 (-) True G43782
TU51707 lncRNA upstream 13540 10030568 ~ 10032075 (-) True G43749
XM_026944892.2 mRNA downstream 7883 9999991 ~ 10008535 (-) False sncga
XM_026933400.2 mRNA downstream 19773 9994621 ~ 9996645 (-) True zgc:193505
XM_034302933.1 mRNA downstream 40002 9961961 ~ 9976416 (-) True shld2
XM_034302934.1 mRNA downstream 40407 9961960 ~ 9976011 (-) False shld2
XM_026933372.2 mRNA downstream 40409 9961961 ~ 9976009 (-) False shld2
XM_034302697.1 mRNA upstream 18460 10035488 ~ 10072123 (-) True bmpr1aa
XM_034302698.1 mRNA upstream 18460 10035488 ~ 10060452 (-) False bmpr1aa
XM_034302190.1 mRNA upstream 59261 10076289 ~ 10128979 (-) False ldb3a
XM_034302186.1 mRNA upstream 59261 10076289 ~ 10123059 (-) False ldb3a
XM_026945320.2 mRNA upstream 59261 10076289 ~ 10122981 (-) False ldb3a
TU51003 other downstream 787534 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 1162624 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1162624 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 1232620 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 1545989 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 1691586 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 2127867 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 2507608 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 2514415 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 2614785 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile