RNA id: TU51754


Basic Information

Item Value
RNA id TU51754
length 218
lncRNA type intronic
GC content 0.50
exon number 1
gene id G43790
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10127414 ~ 10127631 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGAGATGTGAATCCAGCCATCACATCTTTtcaaaactgctgctcatgctataACAGGGCAGCTGGATACACTTGGAGACAAGCTCtctgtctgccctcttctgcatatatgagctcacagatgcccacaattggctagtgttgctctaATCACGAGGGGAGAGAGTATGACGTCCCTCCCACCCAAAGAGCTCAGCCAgtgatggctgtggcatca

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51751 lncRNA downstream 10698 10115935 ~ 10116716 (-) True G43787
TU51707 lncRNA downstream 95339 10030568 ~ 10032075 (-) True G43749
TU51746 lncRNA downstream 98205 10028411 ~ 10029209 (-) True G43782
TU51745 lncRNA downstream 99599 10027604 ~ 10027815 (-) True G43781
TU51743 lncRNA downstream 100945 10026269 ~ 10026469 (-) True G43779
TU51773 lncRNA upstream 31298 10158929 ~ 10161502 (-) True opn4a
TU51888 lncRNA upstream 114310 10241941 ~ 10242882 (-) True G43910
TU51966 lncRNA upstream 126093 10253724 ~ 10253938 (-) True G43978
TU51974 lncRNA upstream 137725 10265356 ~ 10265588 (-) True G43981
TU51975 lncRNA upstream 163436 10291067 ~ 10305082 (-) True G43982
XM_034302186.1 mRNA downstream 4355 10076289 ~ 10123059 (-) False ldb3a
XM_026945320.2 mRNA downstream 4433 10076289 ~ 10122981 (-) False ldb3a
XM_026945358.2 mRNA downstream 4433 10076289 ~ 10122981 (-) False ldb3a
XM_026945383.2 mRNA downstream 4433 10076289 ~ 10122981 (-) False ldb3a
XM_026945374.2 mRNA downstream 4433 10076289 ~ 10122981 (-) False ldb3a
XM_034303063.1 mRNA upstream 8679 10136310 ~ 10161523 (-) False opn4a
XM_026942424.2 mRNA upstream 8679 10136310 ~ 10161523 (-) False opn4a
XM_026942432.2 mRNA upstream 8679 10136310 ~ 10161523 (-) False opn4a
XM_034303064.1 mRNA upstream 8679 10136310 ~ 10152599 (-) False opn4a
XM_034302776.1 mRNA upstream 38087 10165718 ~ 10233081 (-) True usp54a
TU51003 other downstream 898530 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 1273620 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1273620 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 1343616 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 1656985 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 1580983 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 2017264 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 2397005 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 2403812 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 2504182 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile