RNA id: XM_026942424.2


Basic Information

Item Value
RNA id XM_026942424.2
length 1944
RNA type mRNA
GC content 0.44
exon number 10
gene id opn4a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10136310 ~ 10161523 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGACGTAATTAGCTGTCGACTCCCCCGACAGCGGCACCTTGCTCAAAACAATATGCGAGCAAACAAATAagagctataaatggataataaaaaGCGCAAAGGTGGCGCTGAAAAGgctagaataaaaaaagaaaagaaagctctCGAAACTGACGCGGCCAAATGTACGAAGCTGAGTACATATTTCCTTAAAACCATTGAGACAATACAAATGAAGACGATGAGTCGGACGctcttcagcagcagcagcctctAGTCCAGTTTGCTGCTAACAGTGAAGAGCCAAGCTCAGTAACGTTACCAAGCACCGGTCATGAGCCCAACACACCAGAAAGGGCAGGTTGCTATGGTGCATGAGCCCCCTCAGCTCTTCCCCACAGTAGACGTCCCTGATCATGCACATTACACTATTGGTGCTGTAATCTTCGCCATCGGCATCACTGGCATTGTGGGCAACTTTCTGGTCATCTACGCTTTCACCAGGAGTCGTACTCTAAGGACACCTGCcaacatgtttataataaaccTGGCCATCACAGACTTCTTCATGTGTGCCACCCAGACTCCAATATTCTTCATAACCAGTATGCACAAGAAATGGATCTTTGGAGAGAAAGGTTGTGAGCTGTATGCATTCTGTGGGGCTCTGTTTGGGATCTGCTCTATGATCACCCTCATGGTCATCGCAGTAGATCGCTACTTTGTCATCACGCGACCCCTGAGCTCCATTGGCATGCTGTCCGAGAAGAGGGCGCTACTTGTCCTGACATGTGCTTGGGTGTATTCTCTGGGCTGGAGCCTGCCACCCTTCTTTGGCTGGAGTGCTTATGTTCCTGAAGGTCTGATGACTTCTTGTACGTGGGATTACATGACTTTTACTCCCTCGGTTCGGGCATACACAATGCTGCTCTTCATCTTTGTCTTCTTCATACCTCTCATCGTCATCATCTACTGCTACGTCTTTATCTTCCATGCCATTCATAACAGTAATCAAGATGTGAGGAAGATGAACAGGTACAATACCAGAGACAAAGTGAAGAGATTCAACAAGATGAAGAAAGAGTGGAAAATGGCCAAGGTTGCCCTGATTGTCATCCTGTTGTACGTCATCTCCTGGTCCCCCTATTCAATTGTGGCCCTTACAGCGTTTGCTGGGTATGCAGACATGCTGACACCATATATGAACTCGGTGCCTGCTGTGATAGCCAAAGCTTCAGCAATCCACAATCCCATCATTTACGCCATCACTCACCCCAAATACAGagtggCTATAGCAAAGTATATCCCATGTCTGCGTGTACTGCTGTGTGTTCCTCAGAGGGAGCTCCACTCTCTCCACAGCAGTTTTATATCTACCAGACTGTCCACTGTAACCAACCGAGCCTCGGATGTGTCTGGGAACTTGTCCCAAAACAGTACAGGCAAATCTTACATCTCCTCTGCCTCTGACAGTGAATCTGAGGGAAATGACAGCATGGATGGTGCTGCGATCCAGATCCCCAGAATCGTGGTCACCTCTGAGTCTGGCCTGTTTCTGACTTCTGTGAATTGACatattgtgttattgtattCTTTGCTGTGTTGATAAATTACTGGTTTTTGTTGGTtcacatattcatattattattattttatatatataataaaagtgtcAGTTTTATAATAAGGTGGTTATGTCAGGCTGCTTGGGCGGAAAGATGTAACGAACAATCTCCAACCCAATGTCATTTatcttttatgattttatttttgaattgtaCAGTGTGGTCCTAATTCTGCTGGATTTCTACTACTTTTTGTGTATCTCTAAGGGTATGTTAATATGTATGTGAAAGTATGTATTGAACATCACTACAAACGAAAATGTATGTGAATTTATCAATGTTCTATAAATGTGgttgttcttatttatttttattttttaaataaagctataactttC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0009584 detection of visible light biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51754 lncRNA downstream 8679 10127414 ~ 10127631 (-) True G43790
TU51751 lncRNA downstream 19594 10115935 ~ 10116716 (-) True G43787
TU51707 lncRNA downstream 104235 10030568 ~ 10032075 (-) True G43749
TU51746 lncRNA downstream 107101 10028411 ~ 10029209 (-) True G43782
TU51745 lncRNA downstream 108495 10027604 ~ 10027815 (-) True G43781
TU51888 lncRNA upstream 80418 10241941 ~ 10242882 (-) True G43910
TU51966 lncRNA upstream 92201 10253724 ~ 10253938 (-) True G43978
TU51974 lncRNA upstream 103833 10265356 ~ 10265588 (-) True G43981
TU51975 lncRNA upstream 129544 10291067 ~ 10305082 (-) True G43982
TU51991 lncRNA upstream 154202 10315725 ~ 10316448 (-) True G43987
XM_034302190.1 mRNA downstream 7331 10076289 ~ 10128979 (-) False ldb3a
XM_034302186.1 mRNA downstream 13251 10076289 ~ 10123059 (-) False ldb3a
XM_026945320.2 mRNA downstream 13329 10076289 ~ 10122981 (-) False ldb3a
XM_026945358.2 mRNA downstream 13329 10076289 ~ 10122981 (-) False ldb3a
XM_026945383.2 mRNA downstream 13329 10076289 ~ 10122981 (-) False ldb3a
XM_034302776.1 mRNA upstream 4195 10165718 ~ 10233081 (-) True usp54a
XM_034302777.1 mRNA upstream 4195 10165718 ~ 10222203 (-) False usp54a
XM_034302778.1 mRNA upstream 4195 10165718 ~ 10222202 (-) False usp54a
XM_034302774.1 mRNA upstream 4195 10165718 ~ 10222202 (-) False usp54a
XM_034302775.1 mRNA upstream 4195 10165718 ~ 10216765 (-) False usp54a
TU51003 other downstream 907426 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 1282516 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1282516 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 1352512 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 1665881 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 1547091 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 1983372 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 2363113 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 2369920 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 2470290 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile