RNA id: TU51888


Basic Information

Item Value
RNA id TU51888
length 942
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G43910
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10241941 ~ 10242882 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taaaatttaattaattcatttatttaacatggagGTGTGAGAGTTTAAACTAGCAGTGTTAAAGGTTATGTGGGCAAGACAGTCCAAGGGATGGGTTTGAAGACCGAGCCTTCCAACTAGTTCTGTGTTCTTATATGTGCAGTCACACCAGGCATGTGTAGTGACCACTCTACAGGACTTTAAATGGATATTAACTAGATCACTGGAATTAGAATTAAGGTTCTTATTGCCAGTCATGTTGTATTTGGGTGCTTTGAGATGATGATAAATTCCCAGCTACTTGATTGTAACTTGAAGTGATATCTGAGTGTGAGCTCCCAAAGCCACTAGTGAGAGAAAGGAAAGCAGAAAGCGAAGATGATGTGTTAGGGTTATCAAGGCAGCACTGAAGGAAAAAGTAGCAGGTAGTACAGGAACTCATTACAGGAGCATATTATACTACTGAATGTATGAGATGctaagagaataaaataaacgATGAGATACTATGGATAAACATTATATGTTCTTCAAGGCATATTTAACTTTTAATAGACTTACCATACAACAAATTAGATACAGTTTTGAATGTCACACAATGAGCTTGTGTTTATTTACTGCCTCTATTGATTTATGCACTCTTCTGTAAACTATGCACGTAAatctttataataattaattgcaCAAACGTTTGCCAGTTTCATGAATGTTCAGCAGATTAATTGTAGTAGACTGTGGTGAGGATTAGATTGTTGGTATATGCTATAATATTTGATAAGTAGAATCTTGGGTAaatgggtgtgcgtgtgtgtgtgcatagacATGTATGCTGCAGTGATAGTGGACTGAATGACTTTTGATGAAAAGATGTATttttcaagaaataaaaataaacttcagtGCTTCTCAGTGACTCTAATTTGTTACACCACATTGACCCCTAGCCTCAGCTTTGGTATTACA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00030 Pentose phosphate pathway
ko00051 Fructose and mannose metabolism
ko00710 Carbon fixation in photosynthetic organisms

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51773 lncRNA downstream 80439 10158929 ~ 10161502 (-) True opn4a
TU51754 lncRNA downstream 114310 10127414 ~ 10127631 (-) True G43790
TU51751 lncRNA downstream 125225 10115935 ~ 10116716 (-) True G43787
TU51707 lncRNA downstream 209866 10030568 ~ 10032075 (-) True G43749
TU51746 lncRNA downstream 212732 10028411 ~ 10029209 (-) True G43782
TU51966 lncRNA upstream 10842 10253724 ~ 10253938 (-) True G43978
TU51974 lncRNA upstream 22474 10265356 ~ 10265588 (-) True G43981
TU51975 lncRNA upstream 48185 10291067 ~ 10305082 (-) True G43982
TU51991 lncRNA upstream 72843 10315725 ~ 10316448 (-) True G43987
TU52133 lncRNA upstream 410832 10653714 ~ 10655844 (-) True G44103
XM_026941996.2 mRNA downstream 1158 10234757 ~ 10240783 (-) True myoz1a
XM_034302776.1 mRNA downstream 8860 10165718 ~ 10233081 (-) True usp54a
XM_034302777.1 mRNA downstream 19738 10165718 ~ 10222203 (-) False usp54a
XM_034302778.1 mRNA downstream 19739 10165718 ~ 10222202 (-) False usp54a
XM_034302774.1 mRNA downstream 19739 10165718 ~ 10222202 (-) False usp54a
XM_026933185.2 mRNA upstream 1274 10244156 ~ 10253087 (-) True synpo2la
XM_026941011.2 mRNA upstream 12743 10255625 ~ 10318195 (-) False camk2g2
XM_026940966.2 mRNA upstream 12743 10255625 ~ 10318195 (-) False camk2g2
XM_026940948.2 mRNA upstream 12743 10255625 ~ 10318195 (-) False camk2g2
XM_026940931.2 mRNA upstream 12743 10255625 ~ 10318195 (-) False camk2g2
TU51003 other downstream 1013057 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 1388147 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1388147 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 1458143 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 1771512 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 1465732 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 1902013 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 2281754 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 2288561 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 2388931 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile