RNA id: TU51975


Basic Information

Item Value
RNA id TU51975
length 597
lncRNA type intronic
GC content 0.39
exon number 2
gene id G43982
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10291067 ~ 10305082 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTAACAAAACTCTTGCCTAAATCAGGCTAGCATTAAAAACAAGACACAGAGCTTGCACTATCTACCATTCCTAAAAAGTACACATGGAGTGAGCGGTGGCTTGGCACAGGTGTGTGGCCCTGAGATCACTGTGACAGTAATATCTCTCCCCCCTTCTCTTTGtgttgctgtggggatttgtagGACCTGTTTTGTTTTAACTGCTGTGAATCCTCAGGCATCTAAAGCACATAACAGGATAATCCCAGACCGATCATAGAGAGACATAGTAACACTGTCTATCGGCCAACCATCTGGCTCTGGGCAGGCTTAAGCTCatagtcttacacacacacacacacacacacacctatacctATGTTAACTCACAAACTCCTGCACCATTTTCTTCAGGTTCCTATTAACTAGCTCACCTATGATCTAGGGTAAAAGCAAAAATTAATTTGAGTCCATTTTACAGGCTGTCTCTGTTGTGCCAAATGGTGTCTAATATGCGTGGTATATATGAAAGGGTTAACAAAAAGTGTCCTAtttcattctattctatttcatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51974 lncRNA downstream 25479 10265356 ~ 10265588 (-) True G43981
TU51966 lncRNA downstream 37129 10253724 ~ 10253938 (-) True G43978
TU51888 lncRNA downstream 48185 10241941 ~ 10242882 (-) True G43910
TU51773 lncRNA downstream 129565 10158929 ~ 10161502 (-) True opn4a
TU51754 lncRNA downstream 163436 10127414 ~ 10127631 (-) True G43790
TU51991 lncRNA upstream 10643 10315725 ~ 10316448 (-) True G43987
TU52133 lncRNA upstream 348632 10653714 ~ 10655844 (-) True G44103
TU52138 lncRNA upstream 368264 10673346 ~ 10723668 (-) True G44105
TU52216 lncRNA upstream 511590 10816672 ~ 10817292 (-) True G44173
TU52312 lncRNA upstream 617227 10922309 ~ 10925258 (-) True G44262
XM_026933185.2 mRNA downstream 37980 10244156 ~ 10253087 (-) True synpo2la
XM_026941996.2 mRNA downstream 50284 10234757 ~ 10240783 (-) True myoz1a
XM_034302774.1 mRNA downstream 68865 10165718 ~ 10222202 (-) False usp54a
XM_026934574.2 mRNA upstream 18234 10323316 ~ 10330221 (-) True si:dkey-174i8.1
XM_026934564.2 mRNA upstream 18235 10323317 ~ 10328227 (-) False si:dkey-174i8.1
XM_034302810.1 mRNA upstream 26651 10331733 ~ 10447727 (-) False ndst2a
XM_034302809.1 mRNA upstream 26651 10331733 ~ 10447727 (-) False ndst2a
XM_034302808.1 mRNA upstream 26651 10331733 ~ 10447727 (-) False ndst2a
TU51003 other downstream 1062183 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 1437273 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1437273 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 1507269 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 1820638 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 1403532 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 1839813 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 2219554 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 2226361 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 2326731 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile