RNA id: TU52133


Basic Information

Item Value
RNA id TU52133
length 1820
lncRNA type intronic
GC content 0.41
exon number 2
gene id G44103
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10653714 ~ 10655844 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGAGATCTCAGACAGGGTTTCTTGAAGCACTGACAGAATGTGTACTTATTTGTGAAATTCCTCATGTGAAACTTGAGCATTGAGTCCTGCTTCCTAACCGAAGTGTCAGATTTACTCCATACGACATGTCTTGACATCAAATCCCACCTCAAAGAgtattactgtatttactgGTGTGCCTCCGTCACGGTATTTGCTAACATCCATCCCGCTTTGAAAAGCCCCCCTGCTCAGCTGTTAAGGCATTAGTATTGATTTGAAAGCACTAACCATTTCCTCATGGAAAATAATGCAAGATGTGtacattttcttaaattttgaatcattttgaGTCAGGAAGTAGTTTTCCAGGGTGTGAGAGCCTATGATTAATCAATAATCTAATAGTGCTAATAGTTGTAATGACATTCTACTGTCTCAGCACTGCATACAGAGCTCtttcttcactctctctcttttcacacatacacacaaagactTAAACACACAGAGTTCCTATTAGAAAAGAATGTGGATGCTGATCACGGGTGGGGAGGGGGTGCTTGTGGCACGCGACAGGCTAGATTGTTGGTGTGAATCCAATTTGCTTCCTCGCTGGAGTGAGTGCATCGAGTCAAGGTCAAACTTCAGAGTTGCAGAAACATAATGGAAGTCGAGGGGATTATTATGGAGACCGAGCAGAATGAAGAGAAGAAGACAAAGGAGGAAGTTCGAGATAAATGAACAGACAGTGCAATGAATAGTTTAGCTGGTTTAACTGTGACACTCACAGTTTTCACACTTGTCTTTTCCCCCAACATGTTTgcctttcacacaaacacataaaatctCTTCACCCGCACTTTCACATTGccatataatataattacactAATTTTAGGCTAGGACAGCAGGAATACTAACACACATTCAtttgcctacacacacacacacacacacattccttatCCATCCATAAAGCTTAGAGAAACTATATATAGCTCTCTGGATGTTAGTCAAATGAGGTTTAGGCTATTTGTGTTGAAATGCATCAGCAtctaaaaatgtctttaaagaCATGTGGACTCTTTACCCTCTGGGCTGTGCAAAAGAagacgcacacacaaacacatacacacacacacacacacacatatgtagaGTGGGCTAAAAAGAACAATGCCACTCATTCAGTCTATGTAAGAAGGAATAGCAGTCATTGTTAAAGTACCATTCATTTTCCCTACACAATGTCACAAGTACTCTACCGCAGTCCAGTGTTAACCTTAATGTTGTGTACATGCACTGTAAATTGTTAGCATTTTACCATAGTCAAGTCGTGTATCCTGAGGAAATGGAATCTGTGCTGTTTTGTAAACAGATTGGAATTTCTGCTGTTTTGTCTTCTTTGGCTGCCACTCGCTGTGTTCAGGGCAGAGAGAACACAGCGCTGAAGCTTATAGTGTCTTATTTCAGCCAAAATTCTCCCCCTTTAAGGCTTAATGCACTTTTTTATTCACTTGTAAGCACACAGGAAATTGGATTGGTGATAAAATGTCAAGGTCTGCGCAACATTGCTTTTAGTGGCATCTATTCATAGCTTTAGGTGCTTTTCTGATTGAGGTCTCGGTGGCAAGAAAAGTACTGAGCTGTGCTGCTACAGGAATGTGGATGTTTTTTCAGTCATACTCACTGGTGTGGACTTGGCCCAGCCACTGCTTTTGTGATAGCTTGCAGTCTGTCGGTGAGGGTCAGCGCTTAGAGGTTTCTCAAAAACCAATGTGGAATCCAGCTGGTTCATATTAGCACATACTAAACAGGAGCCGGACTGACTTTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51991 lncRNA downstream 337266 10315725 ~ 10316448 (-) True G43987
TU51975 lncRNA downstream 348632 10291067 ~ 10305082 (-) True G43982
TU51974 lncRNA downstream 388126 10265356 ~ 10265588 (-) True G43981
TU51966 lncRNA downstream 399776 10253724 ~ 10253938 (-) True G43978
TU51888 lncRNA downstream 410832 10241941 ~ 10242882 (-) True G43910
TU52138 lncRNA upstream 17502 10673346 ~ 10723668 (-) True G44105
TU52216 lncRNA upstream 160828 10816672 ~ 10817292 (-) True G44173
TU52312 lncRNA upstream 266465 10922309 ~ 10925258 (-) True G44262
TU52323 lncRNA upstream 297661 10953505 ~ 10956492 (-) True G44271
TU52326 lncRNA upstream 318975 10974819 ~ 10978423 (-) True G44274
XM_026942485.2 mRNA downstream 38091 10607859 ~ 10615623 (-) True opn3
XM_026936634.2 mRNA downstream 60474 10587876 ~ 10593240 (-) True pbld
XM_034301541.1 mRNA downstream 84886 10567357 ~ 10568828 (-) True LOC113541130
XM_026932621.2 mRNA downstream 91126 10557601 ~ 10562588 (-) True mtg1
XM_026941836.2 mRNA downstream 136757 10513951 ~ 10516957 (-) False chchd1
XM_034301338.1 mRNA upstream 75687 10731531 ~ 10735897 (-) True LOC113545523
XM_026943420.2 mRNA upstream 129897 10785741 ~ 10797095 (-) True polr1b
XM_026945155.2 mRNA upstream 189187 10845031 ~ 10849713 (-) True prdx3
XM_034302753.1 mRNA upstream 200294 10856138 ~ 10862110 (-) True dennd10
XM_034302754.1 mRNA upstream 200294 10856138 ~ 10861414 (-) False dennd10
TU51003 other downstream 1424830 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 1799920 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1799920 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 1869916 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 2183285 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 1052770 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 1489051 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 1868792 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 1875599 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 1975969 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile