Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU52138 |
| length | 467 |
| lncRNA type | inter_gene |
| GC content | 0.33 |
| exon number | 2 |
| gene id | G44105 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 10673346 ~ 10723668 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU52133 | lncRNA | downstream | 17502 | 10653714 ~ 10655844 (-) | True | G44103 |
| TU51991 | lncRNA | downstream | 356898 | 10315725 ~ 10316448 (-) | True | G43987 |
| TU51975 | lncRNA | downstream | 368264 | 10291067 ~ 10305082 (-) | True | G43982 |
| TU51974 | lncRNA | downstream | 407758 | 10265356 ~ 10265588 (-) | True | G43981 |
| TU51966 | lncRNA | downstream | 419408 | 10253724 ~ 10253938 (-) | True | G43978 |
| TU52216 | lncRNA | upstream | 93004 | 10816672 ~ 10817292 (-) | True | G44173 |
| TU52312 | lncRNA | upstream | 198641 | 10922309 ~ 10925258 (-) | True | G44262 |
| TU52323 | lncRNA | upstream | 229837 | 10953505 ~ 10956492 (-) | True | G44271 |
| TU52326 | lncRNA | upstream | 251151 | 10974819 ~ 10978423 (-) | True | G44274 |
| TU52327 | lncRNA | upstream | 254978 | 10978646 ~ 10980295 (-) | True | G44275 |
| XM_026943376.2 | mRNA | downstream | 14105 | 10650453 ~ 10659241 (-) | False | cdc42ep3 |
| XM_034303069.1 | mRNA | downstream | 14105 | 10650453 ~ 10659241 (-) | True | cdc42ep3 |
| XM_026942485.2 | mRNA | downstream | 57723 | 10607859 ~ 10615623 (-) | True | opn3 |
| XM_026936634.2 | mRNA | downstream | 80106 | 10587876 ~ 10593240 (-) | True | pbld |
| XM_034301541.1 | mRNA | downstream | 104518 | 10567357 ~ 10568828 (-) | True | LOC113541130 |
| XM_034301338.1 | mRNA | upstream | 7863 | 10731531 ~ 10735897 (-) | True | LOC113545523 |
| XM_026943420.2 | mRNA | upstream | 62073 | 10785741 ~ 10797095 (-) | True | polr1b |
| XM_026945155.2 | mRNA | upstream | 121363 | 10845031 ~ 10849713 (-) | True | prdx3 |
| XM_034302753.1 | mRNA | upstream | 132470 | 10856138 ~ 10862110 (-) | True | dennd10 |
| XM_034302754.1 | mRNA | upstream | 132470 | 10856138 ~ 10861414 (-) | False | dennd10 |
| TU51003 | other | downstream | 1444462 | 9224881 ~ 9228884 (-) | True | sf3b5 |
| TU50809 | other | downstream | 1819552 | 8801243 ~ 8853794 (-) | True | G42967 |
| TU50810 | other | downstream | 1819552 | 8849109 ~ 8853794 (-) | False | G42967 |
| XR_003403913.2 | other | downstream | 1889548 | 8755869 ~ 8783798 (-) | False | zdhhc5a |
| trnae-cuc_7 | other | downstream | 2202917 | 8470358 ~ 8470429 (-) | True | trnae-cuc_7 |
| trnag-gcc_1 | other | upstream | 984946 | 11708614 ~ 11708684 (-) | True | trnag-gcc_1 |
| TU53378 | other | upstream | 1421227 | 12144895 ~ 12152506 (-) | False | tmem254 |
| TU53492 | other | upstream | 1800968 | 12524636 ~ 12534075 (-) | False | LOC113537616 |
| TU53486 | other | upstream | 1807775 | 12531443 ~ 12534075 (-) | False | LOC113537616 |
| TU53537 | other | upstream | 1908145 | 12631813 ~ 12633015 (-) | False | LOC113539135 |
