RNA id: TU52216


Basic Information

Item Value
RNA id TU52216
length 521
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G44173
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10816672 ~ 10817292 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCTTGCACTTTAACAGTTTCGCTTTTCACTGGTTTCTCCTCAGTTCGTTTGGATGCAGCAGTTTCATCAACTCTTCTTCTCATCTCGGAATAGATATAAAACAGTGAAGCACACCTTCAGTAGGGTAGGAGAGTAAGAGACCAGCGCTTCCTTTACTGCACACTACTTTAGCTAGATGAATTTCTACTTGCTGTGTTGGACAGTGACAGCTGCTGTCTTGATAAAGTCTTGGGACTTTGAACAATTTGGCTACGTCTGAAACCGCCCACTGCCGTAGATAAACACTGCGGTTACGTTGCCTGAATTCCGGAAAAGTCAGCTCCGCTTACCCACTCTTTAAAATGTTGGTCTGCGTATACATCAGCCTTTACGGTAGACAGTTAGCGAACCTTGCTCGCGCTTTTCAGGTTCATTGAAAAaaacagtttgatgtttttatttaatacaatttttctgttgtttatttttgattttttttttttgtatttaattctcTCGTTCTCTTAATGTACCCaaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52138 lncRNA downstream 93004 10673346 ~ 10723668 (-) True G44105
TU52133 lncRNA downstream 160828 10653714 ~ 10655844 (-) True G44103
TU51991 lncRNA downstream 500224 10315725 ~ 10316448 (-) True G43987
TU51975 lncRNA downstream 511590 10291067 ~ 10305082 (-) True G43982
TU51974 lncRNA downstream 551084 10265356 ~ 10265588 (-) True G43981
TU52312 lncRNA upstream 105017 10922309 ~ 10925258 (-) True G44262
TU52323 lncRNA upstream 136213 10953505 ~ 10956492 (-) True G44271
TU52326 lncRNA upstream 157527 10974819 ~ 10978423 (-) True G44274
TU52327 lncRNA upstream 161354 10978646 ~ 10980295 (-) True G44275
TU52647 lncRNA upstream 569914 11387206 ~ 11387946 (-) True G44582
XM_026943420.2 mRNA downstream 19577 10785741 ~ 10797095 (-) True polr1b
XM_034301338.1 mRNA downstream 80775 10731531 ~ 10735897 (-) True LOC113545523
XM_026943376.2 mRNA downstream 157431 10650453 ~ 10659241 (-) False cdc42ep3
XM_034303069.1 mRNA downstream 157431 10650453 ~ 10659241 (-) True cdc42ep3
XM_026942485.2 mRNA downstream 201049 10607859 ~ 10615623 (-) True opn3
XM_026945155.2 mRNA upstream 27739 10845031 ~ 10849713 (-) True prdx3
XM_034302753.1 mRNA upstream 38846 10856138 ~ 10862110 (-) True dennd10
XM_034302754.1 mRNA upstream 38846 10856138 ~ 10861414 (-) False dennd10
XM_026932931.2 mRNA upstream 77059 10894351 ~ 10927228 (-) True march5
XM_026939537.2 mRNA upstream 165302 10982594 ~ 11010366 (-) True btaf1
TU51003 other downstream 1587788 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 1962878 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1962878 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 2032874 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 2346243 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 891322 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 1327603 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 1707344 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 1714151 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 1814521 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile