RNA id: TU52312


Basic Information

Item Value
RNA id TU52312
length 2927
lncRNA type intronic
GC content 0.38
exon number 2
gene id G44262
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10922309 ~ 10925258 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAAAGTTTTTTCCATAATTGTAGCAAAATGAAATAGTTTTCTGAATTACATATGAAACAACATGAATGTGCATTTTGTCTTGGTATGTATTGATATATTGAGATCCACACTTTTCTACAGTGTGATTCTATGAGTTTCTATAGTTTTTCTACAAGATGATACAACACACAtgagatcagaaaaaaaaagagcaatacTAAAAGAAATGTTTACTAGGAGTAATGTTTAACAACACCAGTAAGATTTTGAAAGTACCCATGAACAAATCTAGGTTCTTGTGCTTTTCCTTCCGTGTCCCTCACTTCCAGCTCTCCTCCAGGGCACTCTGCAGCTTATATAACTGCTCTTCTACAAATCTCCTGCCCCTATTTTGCCTTAAGGTACACCTGTTCCactatttttaaattgcttttttaTGGACTAGGTCAGTCTGTTTGTAGTCTTCAGGGAcacatttcttctttctgcagTTTTTGGGCtatgaaaatgtgtttgtcACACAACAGGAGATTAAAAAGGCACTGTATATAGAGCACACAAATATTAATCACAGTTACGTTTTTACTGTTTGTTAAGCTCATACAGCATTGACACGGCCTACTGAGTTCAGACATAGTTTAATGTTATAGGCAAAGCAGCTTAAGGTCACCTTTACTGGCACCTACCTCCGTCAATCAAACAAGGGCATCTCAACACCACTACCTGCTGTTGATATAGGCTGTGGGGCAATTTCAGGCACCACACTTTTAAgtaaggtataaaacacttggaggtgtGCTCTaggaagtggtttattcctcttataacacagcagtttgccaatagttgtgtttttttactcaataaatgaatgaaacattatgcctatttaaacatttattattacatttaattttgtggaacgtccatgaaacaatatagttcctgttaccacttatgttatagcagttgtAAACAGTtgtcccctcaccagcctctctttttctctcttgaagttgataagacacagcttgtcatgttaccgaaaaACCGGAAAGCCCAtagtcttgaagactttcccatagtGGACAACTTattgagtgttacaaagcactgacactggagactccttccataaatgttaaacatctccttacagaaagcttcaccatatcaacaattagaaatttttttttactcagtctATTCTAAGCCTTGTATTACATGGCACATATAAGTctttgtgtaagttgttactatagaaacaataacatgttgGGACaagtgcatttatatatatatattgttttgcattacagccagcactatcgtcagagctgctattctagaaaatcaatcagcaccttctgaccaatcagtttcGAGAATTCATCATCACTGTtgtataatcttttttttttttaaagatagacattctttctttcccatGTTTTTATAGCATTGTGTTTGTagtaatttaaaattattgaTCAGGTCTGTCGTTACACATTCTTAATGTAATGctgctaattttatttttatttttaaccagtAGTTTGCTCATTATCTGGCAGGTTTAGCACATTTCAGACTCTTAACACGACTGCCGTTTCAGCAGCCCACATCTgcttaatataatattaactcGATTGTATGTTGCACAACTGGTTCCTCCCATGATCAAAGTATGGCcattaaattactttttataAAGGGTTGATGTTTTTAAAgggtacatttttttgtttttcctcaaaGTCTACTTATAATGTTTGTGGTTTTTGAATACATGAACATTTTCCAACAGACCACTTCTGATTGCGtttacatttacctcatttggctgatgcttttatccaaagtgacttaaaaggacttgagacaggatacaacggAGCATTTGTACGCGGacaccctgaccatcacacccgtttgtgggccttccccaaactgttgccacaaagtcagcAACAGTTAACAGAAGGTGAATTAcagtttcacttcactggaactacggGGCCCGAACATgtcccagcatgacagtgtcGCTGTGCAAAAAAGCGAGGTCCATGGTTTTCGAGGTTGGAGTGGATGGACCAAAGTGGCCTGCAGAAAGCCCCAgcatcaaccccactgaacacctttgtgatgaactgaaacaccgaCTGCATGCCATGGCCTTCACGCCCAACaacagtgcctgacctcactaatgctcttgtggctgaatgagcaaatcctcaCCACTATGCTctgaaatctagtggaaagccttcccagcaaagggaggactaaatctggaacaggatgttcaaaTAGCACATATTTgggtgatgctcaggtgtccacgtacttttggccatgtagtgtgcAGCACTCATcgcagttagctggctagcttgttgctaacaaaagaagaacatggaAGCATCTAGGGTTTTTTCCTATTTGTAGCTTGAACACAAAGAGGTCAAGAATGACATAATTCTCAGTTCTGACTTTCCGCTTCTGAGGTAACACACCCTGCAGCGTTTAAAGCCCTGGAAGATAAATAATGGCATCTGCTGGACGTACAGAATAACCCTATAGGTTTGGGACACATAATCCTTCTGAAGTAAGGCCAACAGCACAGCAAGTTGATAAATCTCACTCACTGAAAGTTTACAACAGTAAAACTAGGCTATTGCTGCAAAAGTGAGAGGGTTGTCCATTTCTAGCATTGTTTATTAGATCAAGCCTGTATAAATATAGACCTAATAAGTTTATTAAGTTAGAACATTAGCAATGGCGCATCCTTAGTCTAGATAAACCTGCCTCGTAATCAGTGCCATTAaggtataaaatattaaaataatatggaCTTTTTTGCAAATTAGTTGCAGATTAGTTTCCACATTTAAACTTGAACTAGAGTCAGAAGTGTATCTGTGTTTACACAGTATGTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52216 lncRNA downstream 105017 10816672 ~ 10817292 (-) True G44173
TU52138 lncRNA downstream 198641 10673346 ~ 10723668 (-) True G44105
TU52133 lncRNA downstream 266465 10653714 ~ 10655844 (-) True G44103
TU51991 lncRNA downstream 605861 10315725 ~ 10316448 (-) True G43987
TU51975 lncRNA downstream 617227 10291067 ~ 10305082 (-) True G43982
TU52323 lncRNA upstream 28247 10953505 ~ 10956492 (-) True G44271
TU52326 lncRNA upstream 49561 10974819 ~ 10978423 (-) True G44274
TU52327 lncRNA upstream 53388 10978646 ~ 10980295 (-) True G44275
TU52647 lncRNA upstream 461948 11387206 ~ 11387946 (-) True G44582
TU52906 lncRNA upstream 914194 11839452 ~ 11839822 (-) True G44818
XM_034302753.1 mRNA downstream 60199 10856138 ~ 10862110 (-) True dennd10
XM_034302754.1 mRNA downstream 60895 10856138 ~ 10861414 (-) False dennd10
XM_026945155.2 mRNA downstream 72596 10845031 ~ 10849713 (-) True prdx3
XM_026943420.2 mRNA downstream 125214 10785741 ~ 10797095 (-) True polr1b
XM_034301338.1 mRNA downstream 186412 10731531 ~ 10735897 (-) True LOC113545523
XM_026939537.2 mRNA upstream 57336 10982594 ~ 11010366 (-) True btaf1
XM_034302584.1 mRNA upstream 112711 11037969 ~ 11041301 (-) True ccnj
XM_034302583.1 mRNA upstream 112711 11037969 ~ 11040883 (-) False ccnj
XM_026942945.2 mRNA upstream 112711 11037969 ~ 11040858 (-) False ccnj
XM_026943244.2 mRNA upstream 129510 11054768 ~ 11094954 (-) False blnk
TU51003 other downstream 1693425 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 2068515 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 2068515 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 2138511 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 2451880 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 783356 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 1219637 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 1599378 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 1606185 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 1706555 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile