Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU52906 |
| length | 203 |
| lncRNA type | intronic |
| GC content | 0.47 |
| exon number | 2 |
| gene id | G44818 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 11839452 ~ 11839822 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU52647 | lncRNA | downstream | 451506 | 11387206 ~ 11387946 (-) | True | G44582 |
| TU52327 | lncRNA | downstream | 859157 | 10978646 ~ 10980295 (-) | True | G44275 |
| TU52326 | lncRNA | downstream | 861029 | 10974819 ~ 10978423 (-) | True | G44274 |
| TU52323 | lncRNA | downstream | 882960 | 10953505 ~ 10956492 (-) | True | G44271 |
| TU52312 | lncRNA | downstream | 914194 | 10922309 ~ 10925258 (-) | True | G44262 |
| TU52909 | lncRNA | upstream | 72388 | 11912210 ~ 11914029 (-) | True | G44820 |
| TU52938 | lncRNA | upstream | 168004 | 12007826 ~ 12008029 (-) | True | G44848 |
| TU52939 | lncRNA | upstream | 171109 | 12010931 ~ 12021468 (-) | False | pwwp2b |
| XR_004577842.1 | lncRNA | upstream | 401787 | 12241609 ~ 12242121 (-) | True | LOC117596852 |
| TU53414 | lncRNA | upstream | 450505 | 12290327 ~ 12303541 (-) | True | G45236 |
| XM_034302556.1 | mRNA | downstream | 52817 | 11772007 ~ 11786635 (-) | False | valopa |
| XM_034302555.1 | mRNA | downstream | 52817 | 11772136 ~ 11786635 (-) | False | valopa |
| XM_026943119.2 | mRNA | downstream | 52817 | 11772251 ~ 11786635 (-) | True | valopa |
| XM_026933013.2 | mRNA | downstream | 189250 | 11595230 ~ 11650202 (-) | True | LOC113538140 |
| XM_034301825.1 | mRNA | downstream | 196438 | 11595230 ~ 11643014 (-) | False | LOC113538140 |
| XM_026940020.2 | mRNA | upstream | 171573 | 12011395 ~ 12021405 (-) | True | pwwp2b |
| XM_026940033.2 | mRNA | upstream | 182169 | 12021991 ~ 12030144 (-) | True | LOC113542467 |
| XM_026944921.2 | mRNA | upstream | 305018 | 12144840 ~ 12152522 (-) | True | tmem254 |
| XM_026942027.2 | mRNA | upstream | 316395 | 12156217 ~ 12186613 (-) | True | srfb |
| XM_026942017.2 | mRNA | upstream | 316395 | 12156217 ~ 12186612 (-) | False | srfb |
| trnag-gcc_1 | other | downstream | 130768 | 11708614 ~ 11708684 (-) | True | trnag-gcc_1 |
| TU51003 | other | downstream | 2610568 | 9224881 ~ 9228884 (-) | True | sf3b5 |
| TU50809 | other | downstream | 2985658 | 8801243 ~ 8853794 (-) | True | G42967 |
| TU50810 | other | downstream | 2985658 | 8849109 ~ 8853794 (-) | False | G42967 |
| XR_003403913.2 | other | downstream | 3055654 | 8755869 ~ 8783798 (-) | False | zdhhc5a |
| TU53378 | other | upstream | 305073 | 12144895 ~ 12152506 (-) | False | tmem254 |
| TU53492 | other | upstream | 684814 | 12524636 ~ 12534075 (-) | False | LOC113537616 |
| TU53486 | other | upstream | 691621 | 12531443 ~ 12534075 (-) | False | LOC113537616 |
| TU53537 | other | upstream | 791991 | 12631813 ~ 12633015 (-) | False | LOC113539135 |
| trnae-cuc_8 | other | upstream | 799430 | 12639252 ~ 12639323 (-) | True | trnae-cuc_8 |
