RNA id: TU52909


Basic Information

Item Value
RNA id TU52909
length 1800
lncRNA type intronic
GC content 0.44
exon number 2
gene id G44820
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11912210 ~ 11914029 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

attttcttaGCCAAAGACTGTACAACACTCCTCCGTAGCACTGAACACAGATTTAGTTCCAATTGCTTAAAGTCACTATTGCCAATAAATTGCACAGAAATGCTTTAAAGATGCGGTTTGTAATAATCTATAATGAGCCACTCACcaccaaaaaacatgctggaagGTGGAGAGGCAATTCTAAACTGCTCCtaaatgtgaatgtgtgtgtgtgtgtgtgtgtgttgactggACTGAcgtcctatccagggtgtattcccacctcataccttgtgttcctgggataatgTATTGATTCAGAATATTGCTATGCATTGGATATGGCTAGTTTCTTaatttcaggcttctgtttacatttttccggCCCTGAAAATAGCACCACCTTGAGTCAGAACAGAGCTGCCTcagtttttacttttactttacaaGACAATTCATATAGTTCTAACAGAGAGATGGAGCTAGGATggcttgtcagtgttttcatttcagttgtAATATTTCACACATGCAGAGAGCTCTTTCTCTATCGTTTCTTTATCTGTGCCTCGTTTGTGCTGAAGAAGTGGATTGAGGTTGATGTGGTAAGGTCATGAGGAAGCTGTGTAACAACTGCATAGGGTAATGCTgctagccacacacacacacacacacacacacacacttttcttcctcttgtcaaAACATTCTGGCGCATGCATAACCAGGTTAAAATATGGCAAACTAATTCCATAGGCTCTCATATGGTGCGAAGTACAGAGCACAGTGAGGCTATTTGAATGGAGGAGATGTCAGTGGAGCAATATTGTAGCGCCATAACTCTCCGAGGCCATCAGTCAAGCTTTCAGGAGTGCaaatacacagcacacacatccaCTCAGCCCGACcccgacacacacacgcgcacacactctctccctagACATATGTTGAGCGCCAATCGATGAGTCTGCCATCAGAAGTGAATTATTAAGGGGATAAGGCAAGCTGGGGCTCACTGGAAAAAATTTGGGctgaaatatacacacaattaaTAGATTGTACAGAGGGATGGAAAACGAATGCCTTTATTATAGCGAGCCTAATCTGTGGAATCTGAGTTCACGCTCTCCTCGGCACTATCGCAGCAATGAGCCCATAACATCCACTTATGTGTGTTTTCCCTCTCTGTTCccccccacaaacacacacacgggtgCAGAGCCAGGGGCCTCATAAAACCAGGCtgataaagtggtgtgtatatgGTTGGATTAGTTTAGCGGGGGCATCAAGATATAGGGTGAGGAGTAAAtcagatgggtgtgtgtgtgtttacgtgttCGCCAGACACAGATAATGATGTGATTGGAGCGTGCAGGGGGCCTGCTGCTCTGTGTACATTATGGTGCGTGGCCCTTGGTGtgactcctgtgtgtgtgtgtatgtgtgtgtatatgtgtgtgtgtgtgtgagagagaaagagagagagcatgaagcCCAGTGAAGGTGAGCCTGTCATATCGATCTTTTTAACGCTAAAATATGAGCCACTTTACTCTGCTCCCCAGCCCagtgatgtgaaaaataataactCGGTcccaaattaaaaatattgatCGCTCAGGAGGTGTTGAGAGCAAATAAACACCcactgaaggattttttttcagccCTCCCCCCATCTTTCTATGTCTTCAACAACACTCcctgcgtacacacacacatacttggggcatctctctatctctatctgaTGACAGTAGGTCAGGCTGCAGTTGCGGGGTGTGTAAATATGATCAGTGTGTGGTTAAATATGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52906 lncRNA downstream 72388 11839452 ~ 11839822 (-) True G44818
TU52647 lncRNA downstream 524264 11387206 ~ 11387946 (-) True G44582
TU52327 lncRNA downstream 931915 10978646 ~ 10980295 (-) True G44275
TU52326 lncRNA downstream 933787 10974819 ~ 10978423 (-) True G44274
TU52323 lncRNA downstream 955718 10953505 ~ 10956492 (-) True G44271
TU52938 lncRNA upstream 93797 12007826 ~ 12008029 (-) True G44848
TU52939 lncRNA upstream 96902 12010931 ~ 12021468 (-) False pwwp2b
XR_004577842.1 lncRNA upstream 327580 12241609 ~ 12242121 (-) True LOC117596852
TU53414 lncRNA upstream 376298 12290327 ~ 12303541 (-) True G45236
TU53441 lncRNA upstream 454484 12368513 ~ 12369349 (-) True G45249
XM_034302556.1 mRNA downstream 125575 11772007 ~ 11786635 (-) False valopa
XM_034302555.1 mRNA downstream 125575 11772136 ~ 11786635 (-) False valopa
XM_026943119.2 mRNA downstream 125575 11772251 ~ 11786635 (-) True valopa
XM_034301829.1 mRNA downstream 288234 11595230 ~ 11623976 (-) False LOC113538140
XM_026940020.2 mRNA upstream 97366 12011395 ~ 12021405 (-) True pwwp2b
XM_026940033.2 mRNA upstream 107962 12021991 ~ 12030144 (-) True LOC113542467
XM_026944921.2 mRNA upstream 230811 12144840 ~ 12152522 (-) True tmem254
XM_026942027.2 mRNA upstream 242188 12156217 ~ 12186613 (-) True srfb
XM_026942017.2 mRNA upstream 242188 12156217 ~ 12186612 (-) False srfb
trnag-gcc_1 other downstream 203526 11708614 ~ 11708684 (-) True trnag-gcc_1
TU51003 other downstream 2683326 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 3058416 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 3058416 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 3128412 8755869 ~ 8783798 (-) False zdhhc5a
TU53378 other upstream 230866 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 610607 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 617414 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 717784 12631813 ~ 12633015 (-) False LOC113539135
trnae-cuc_8 other upstream 725223 12639252 ~ 12639323 (-) True trnae-cuc_8

Expression Profile