RNA id: TU52939


Basic Information

Item Value
RNA id TU52939
length 2160
lncRNA type sense_over
GC content 0.46
exon number 2
gene id pwwp2b
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12010931 ~ 12021468 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGTTGACGGGAAGGGGTACGCTGGCAAAGCCGATCTTAAATGCATGGTGATCTCTAGAGTGTTAACATCTTCCCAAAACGCGGAAACCTGGATGAGAAGGAAACGCGAGCTGAAGCGGAGGATCGCGCGCTCACAGATTCCTCTCTCGCCTCTTTGTGATGTCACGGCTGGCCGCGCGGCTGTAATTGCGCCGGTGGGTTGATGGCGTCATTCCGTGGCCCTGTGTAGCCTCCCGTGCTCGCTAGCAGAAGGAGCGAGGATCTGAGGCCGACGCGCGCGGCTCCGGCGCCCGGGAACGAGCAGCGCCAAGCCGGACACTTCAGCCAGGAAACATGGAGGCCGCGGCCGAGGAGCTGCGGGCCGGCTCCCGGATTCCGGTCACCATCGAACAGATAGTGAATGACACACTGGTGGTGACGCTCACTTACCGAGATAGGAGCTACACCGGGATTTTGCTCGATTGCAACAAAAAgAGTGAAAGAGGGGAAGGCTGGACTCTGGCTGGATTCAGGACCCTGTGCTCCCCTCCTGTCATTCCCAACCAGGACGGAGTGCATTTGCTACAGATCTCATGAGTgaaggtgctttttttttcacctgccCGGAAGGAGTAATCAGCCACCATGCAGAGCAGTTGAGGGCTTGAGGGAGCAAGCAGGCAGGAACATCTGGGAAACACAAGAGAAGAACTCTTCCTCTCCACCTGTTTTTCTACCCTATCAATTTGTTCAGGACTTCTGTTTTAGTATAATGAGTAGCTCAACACTAAATCCGAATGTATTTATTGCCGGTGAAGCACAGGCGACCTTGCTACAGTCTCATACGATTGATCCCACCGCTGCTGTTTTCTGTCGGTGTAGAGCTCCTGCCTGTCAGCGGAGTTACTATAGCTAATGAATCCATCATGGATACCATCAGCCAGCCTGCTCTAGTGACATTCATCTAGTCCACTTAGGCAGGAAAAGACGGACATCCATATGATGGTAAATAACATGGCTTACTCTAAggtctctttcctttttctttcaaaactGAAAATGTGAAACACGTTTTGTATCCTCTGCATCTAGAGATCATTGTGTAGGTCTTAAAACATGCAGTATGTCGTCATTAATAGATATATTTTCACCAGAGGGCCGAATTTCTTCAAATGGCCTGTCCCTTTGaggaaatgtaacattttttccgttttttcctcatttatttttcatttttattacgATGTTTTGATGCTCTTGGTCTGAGGGCCTTGGGAACTGTGTCATGGCTTGTTTGAGAATCACAGAGTTTCGTATGTACttgctttaattatttaatgtgtcATGTAAAGAAAAGCACTTTATCTGTACCTTCAGTGGCCTGCTGGACACTCGTACAACGAACACTAATTTAGAGTTTTACGGCTGTGAACTGCGGACAAGCTCTCAGCAGCCCTCTGGTTCCGACTATCACACCCGGCGCCTGAAAAGTGACTTCTTTTCTATCAGGTTTGGACATGGATGAGAAAACAAGACGCTTTCAGGAACTAGTTGTGTACACTGTATTATTGCGGTTAGTCCGTTTTGTCAACCTGCATTTGTTTTCCTTCCCACCACCGTCTCCCTATAAATGAAATTTTCCACTGGAGAAATGGACAGAAGTGTATACTCCTATGCATCACATCtttattaaagctttaaaaaaaaaaaaaaaaaacaaaaaaaaacataaacctgCTGTTATGGTACTATGAATTCCATACCTGTGTGCTCCGGGCACCAAGCAGAACTGAAATGCATTTACACTGCAGGTTTGTTGACTTGTTTCTCCTTCAGGTGGAGAAGAAAGAGTCTTTCTAGTCAGCAACTGACCTTTTAGGGCCTTGAGAATTTAAAGAGCCACTTCAGTGAGGGCATGGAAACCAGGGAGGAAAGGAGGTGGGGGAAGGGTGCCAAACCCAAGCGGAGGTATATTTTAAGCTCACTGCTAAGCGCAAAGCGTCTCACCACTGCATTTCAATGGTAGGTTCTTGTACTTTTTACGGAtcaatttttttcctccttcctgAAATGGTTTTTGAAGGAGGACAGTTGTGCGAGTGCCAGTACAGAGACACTCGAACACTGTCCTCAGATCAGTGGAATTTTTTACATGgtgtacataaaataaaatatacaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52938 lncRNA downstream 2902 12007826 ~ 12008029 (-) True G44848
TU52909 lncRNA downstream 96902 11912210 ~ 11914029 (-) True G44820
TU52906 lncRNA downstream 171109 11839452 ~ 11839822 (-) True G44818
TU52647 lncRNA downstream 622985 11387206 ~ 11387946 (-) True G44582
TU52327 lncRNA downstream 1030636 10978646 ~ 10980295 (-) True G44275
XR_004577842.1 lncRNA upstream 220141 12241609 ~ 12242121 (-) True LOC117596852
TU53414 lncRNA upstream 268859 12290327 ~ 12303541 (-) True G45236
TU53441 lncRNA upstream 347045 12368513 ~ 12369349 (-) True G45249
TU53462 lncRNA upstream 413806 12435274 ~ 12435483 (-) False nin
XR_004577879.1 lncRNA upstream 605578 12627046 ~ 12627481 (-) True LOC117596889
XM_026936509.2 mRNA downstream 37426 11817728 ~ 11973505 (-) False LOC113540195
XM_026936515.2 mRNA downstream 37426 11817728 ~ 11973505 (-) True LOC113540195
XM_034302556.1 mRNA downstream 224296 11772007 ~ 11786635 (-) False valopa
XM_026940033.2 mRNA upstream 523 12021991 ~ 12030144 (-) True LOC113542467
XM_026944921.2 mRNA upstream 123372 12144840 ~ 12152522 (-) True tmem254
XM_026942027.2 mRNA upstream 134749 12156217 ~ 12186613 (-) True srfb
XM_026942017.2 mRNA upstream 134749 12156217 ~ 12186612 (-) False srfb
XM_026936926.2 mRNA upstream 168749 12190217 ~ 12289852 (-) True ptk7b
trnag-gcc_1 other downstream 302247 11708614 ~ 11708684 (-) True trnag-gcc_1
TU51003 other downstream 2782047 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 3157137 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 3157137 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 3227133 8755869 ~ 8783798 (-) False zdhhc5a
TU53378 other upstream 123427 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 503168 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 509975 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 610345 12631813 ~ 12633015 (-) False LOC113539135
trnae-cuc_8 other upstream 617784 12639252 ~ 12639323 (-) True trnae-cuc_8

Expression Profile