RNA id: TU53072


Basic Information

Item Value
RNA id TU53072
length 286
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G44970
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12144117 ~ 12144402 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttaaattcattattgtTAAAGTAGGTTGATTTAGCGTGACTGAAGCAGAGAGGAATGAGGCAAGCTCCCAATCTTGCAGAAAAATGAGCAAGGTTAAGCTTAGTGATGGATCAAATTCAGTAAATATGGCTTTATGGTAATGGCAAATGCCAGGCCTCTAAATGTTTCATAAATCAGGGCTGGAGCACTCAGCCTTAGTTCTGCAAAGAAAGTAGAAACAGTTGGTAcatcatttgtgtttttctagtgtttgattatacattttatttgcttttatgaataaat

Function

GO: NA

KEGG:

id description
ko04973 Carbohydrate digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52982 lncRNA upstream 11940 12131807 ~ 12132177 (+) True G44891
TU52936 lncRNA upstream 114011 12029634 ~ 12030106 (+) True G44846
TU52933 lncRNA upstream 117087 12026824 ~ 12027030 (+) True G44843
TU52856 lncRNA upstream 148974 11954989 ~ 11995143 (+) True G44777
TU52847 lncRNA upstream 181931 11958540 ~ 11962186 (+) True G44768
TU53076 lncRNA downstream 9982 12154384 ~ 12156122 (+) True G44974
TU53074 lncRNA downstream 11846 12156248 ~ 12158228 (+) True G44972
TU53152 lncRNA downstream 171131 12315533 ~ 12315870 (+) True G45040
XR_003404309.2 lncRNA downstream 345112 12489514 ~ 12499019 (+) True LOC113542444
XR_004577794.1 lncRNA downstream 494915 12639317 ~ 12643304 (+) True LOC117596823
XM_026942972.2 mRNA upstream 1088 12134099 ~ 12143029 (+) True LOC113544275
XM_026939817.2 mRNA upstream 23604 12037501 ~ 12120513 (+) True LOC113542347
XM_026936532.2 mRNA upstream 328465 11812785 ~ 11815652 (+) True nkx6.2
XM_026942772.2 mRNA upstream 377703 11745750 ~ 11766414 (+) True LOC113544122
XM_026936991.2 mRNA downstream 185648 12330050 ~ 12340992 (+) True dmac2l
XM_026937000.2 mRNA downstream 188598 12333000 ~ 12340992 (+) False dmac2l
XM_034302796.1 mRNA downstream 188661 12333063 ~ 12340992 (+) False dmac2l
XM_034302795.1 mRNA downstream 188790 12333192 ~ 12340992 (+) False dmac2l
XM_026944217.2 mRNA downstream 259547 12403949 ~ 12418948 (+) True atl1
XR_004577785.1 other upstream 377703 11745749 ~ 11766414 (+) False LOC113544122
XR_003404598.2 other upstream 417345 11682864 ~ 11726772 (+) False LOC113545306
trnag-gcc other upstream 437112 11706935 ~ 11707005 (+) True trnag-gcc
trnag-ccc other upstream 552712 11591335 ~ 11591405 (+) True trnag-ccc
XR_004577793.1 other upstream 973003 11099593 ~ 11171114 (+) False dntt
trnay-gua other downstream 491918 12636320 ~ 12636406 (+) True trnay-gua
TU53286 other downstream 495434 12639836 ~ 12643195 (+) False LOC117596823
trnat-ugu other downstream 523412 12667814 ~ 12667886 (+) True trnat-ugu
XR_004577802.1 other downstream 785157 12929559 ~ 12936802 (+) False spef1
XR_004577803.1 other downstream 785157 12929559 ~ 12936802 (+) False spef1

Expression Profile