Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU53152 |
| length | 312 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 2 |
| gene id | G45040 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 12315533 ~ 12315870 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU53074 | lncRNA | upstream | 157305 | 12156248 ~ 12158228 (+) | True | G44972 |
| TU53076 | lncRNA | upstream | 159411 | 12154384 ~ 12156122 (+) | True | G44974 |
| TU53072 | lncRNA | upstream | 171131 | 12144117 ~ 12144402 (+) | True | G44970 |
| TU52982 | lncRNA | upstream | 183356 | 12131807 ~ 12132177 (+) | True | G44891 |
| TU52936 | lncRNA | upstream | 285427 | 12029634 ~ 12030106 (+) | True | G44846 |
| XR_003404309.2 | lncRNA | downstream | 173644 | 12489514 ~ 12499019 (+) | True | LOC113542444 |
| XR_004577794.1 | lncRNA | downstream | 323447 | 12639317 ~ 12643304 (+) | True | LOC117596823 |
| TU53285 | lncRNA | downstream | 332025 | 12647895 ~ 12648406 (+) | True | G45153 |
| TU53325 | lncRNA | downstream | 358538 | 12674408 ~ 12674623 (+) | True | G45170 |
| XR_004577841.1 | lncRNA | downstream | 417562 | 12733432 ~ 12739226 (+) | True | LOC117596851 |
| XM_026942972.2 | mRNA | upstream | 172504 | 12134099 ~ 12143029 (+) | True | LOC113544275 |
| XM_026939817.2 | mRNA | upstream | 195020 | 12037501 ~ 12120513 (+) | True | LOC113542347 |
| XM_026936532.2 | mRNA | upstream | 499881 | 11812785 ~ 11815652 (+) | True | nkx6.2 |
| XM_026942780.2 | mRNA | upstream | 549119 | 11745750 ~ 11766414 (+) | False | LOC113544122 |
| XM_026936991.2 | mRNA | downstream | 14180 | 12330050 ~ 12340992 (+) | True | dmac2l |
| XM_026937000.2 | mRNA | downstream | 17130 | 12333000 ~ 12340992 (+) | False | dmac2l |
| XM_034302796.1 | mRNA | downstream | 17193 | 12333063 ~ 12340992 (+) | False | dmac2l |
| XM_034302795.1 | mRNA | downstream | 17322 | 12333192 ~ 12340992 (+) | False | dmac2l |
| XM_026944217.2 | mRNA | downstream | 88079 | 12403949 ~ 12418948 (+) | True | atl1 |
| XR_004577785.1 | other | upstream | 549119 | 11745749 ~ 11766414 (+) | False | LOC113544122 |
| XR_003404598.2 | other | upstream | 588761 | 11682864 ~ 11726772 (+) | False | LOC113545306 |
| trnag-gcc | other | upstream | 608528 | 11706935 ~ 11707005 (+) | True | trnag-gcc |
| trnag-ccc | other | upstream | 724128 | 11591335 ~ 11591405 (+) | True | trnag-ccc |
| XR_004577793.1 | other | upstream | 1144419 | 11099593 ~ 11171114 (+) | False | dntt |
| trnay-gua | other | downstream | 320450 | 12636320 ~ 12636406 (+) | True | trnay-gua |
| TU53286 | other | downstream | 323966 | 12639836 ~ 12643195 (+) | False | LOC117596823 |
| trnat-ugu | other | downstream | 351944 | 12667814 ~ 12667886 (+) | True | trnat-ugu |
| XR_004577802.1 | other | downstream | 613689 | 12929559 ~ 12936802 (+) | False | spef1 |
| XR_004577803.1 | other | downstream | 613689 | 12929559 ~ 12936802 (+) | False | spef1 |
