RNA id: TU53378


Basic Information

Item Value
RNA id TU53378
length 1960
RNA type TUCP
GC content 0.40
exon number 4
gene id tmem254
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12144840 ~ 12152522 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAAAGAGACCGCTCTGTATTACAGTAGCTCTTTCTGGTAAACAGTCGGAGAGAGTTTCAGGCTTTAGACTGGAGGAGGTTTAACCGGGTTACAAATGGCTAAAAGTGATGGCAGCTCGTATTTCAGGAGGTGCAGCCTCTTCTGGATAGTGACTGTAACTCTGTCCATGGGTTACTACACAtgggCCGTGTTTTGGCCAGAGCAACTCCCTTATGACACTTTGGGTCCACTCGGTGCTCTCTCAGAGTATCTGGTCAAAGAATATCACAGTGTCATGTACAAGGGATGGTGGCTTGCTTGGGCAGTCCATCTGTGTGAAGCTCTGGTGGCACTGAAAGTATGCAGTGATAAAGGCATCGACAGTCCATCAACTCGGCTCCTGTGGTTTGTTCAGACTTTTTTGTTTGGCTTTGCGTCTCTGGGTTTGCTCCTCAAATACAAGGCAGGCGGCCGAGCCAAACGTCACTGAGCAGCTGCAGACATGCACTGCTCTGAAATGGAACACTATTTTCCAATGGATAAATCAGGATTAGAGCCTTTtaatcaaatacaaatatgcGGACCATATTTCCAAAAACAATCATGATGTAGAGCTTACACAGCTCCGTGAAACAGACTTGATATGACAGGGAGAGTTCTGGACAGTAACACAACCTCTTACAGCAACACTCCTTACaagaatatttttataaaatggaaGACTTAAATAATAACCACCATAAGCTAGGATTATTAGCTTTACTGTAGATGCTGTTCCAAGTTGGAGACCCAGTTTCAGAGCAATGAAAATATGTGCCTTCCACTCATACCCAGTTTTCAGGGTCTAATAATTTCTTGATAGGTTCCTGTGCATGTCATTGTCCATAACAGCATCTTGAGTCATCTGGTTAAAACTGTTTTAAGATTTGAATTTAAGGCCCTGTTGTTCCCTACACCGACTGTGACTTGGAGTTTAAGCTCTCATTGGGTGGGAGTTTCATCATTTTAGTTTGGCAGTTAGCAATTTCACAGAGACATGATTCACAGACTATAAACTATGCCTTCACCCACACAGATTATTGGTGCTGTCACAGATTAGAAAACGGGCCACCTGAATGGAAAATGGGTATGTCAAACATTGGGATAAAATTGGCAAACATGAGTAGGAAgttgttttaaaattgtattgagCACAATTGCTTTGGAATATAGAGAAGAAGTTGCTTCAGATGCCTTTGTGTTATCAGCCAAGCTTGAACACAATGTCAGTCAGCCATATTGACATGAAAAAGATTCTGGCTCTCATctgattttatatcattttaccCTTGATCAGGTCCTCactgaaaaaaagttttatattaataataagacCTGTGGCAAATTAGAGTGACAAATACTACTCAGTTTAGTATTTAAGTAATATTTGTTAAAGTAAGTTGTTGAGCAGCCCTTATGATAGGAACTCCTGTTTGTGATTACTCTGTGATGTAGGTCAGCTTCTTCCAAGAAGTCCAATATTAAACTGGCTGAGGCTGGTCTTAACCGGACTGTTTTCCAATATGCCCTCAATTACTCATAGAACTTGGGAGTGAATACTTTTGCATACCAGATGGCTGCTTGTTTAAACACTATACCAAACAAAAGAAACCTATGCAAACTATTTGGTGCATTTTCAGGTTAGATTTCCTGCAGAACCTGAGTCATGTAGTCCATCTATATCACAGCAGGGCACGAGTCTGACATCCTCTATTAATCACAGCACAGTGGCTGGAGTGAAACATCAGGTTACAGGTTTTACTGATGCGTGATGCACAGCATTCCATATACTGAAGaagaatttaaattatttaataggTTTATATGAATAAGGAATTAATTAAATGAGATTTCTTAAATTTATTATAGGTTATATGCAGTggttttttaattatattaactgTTCTAGTTATTACTCAGATGGTGTGATGAGGTTTATCa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52939 lncRNA downstream 123427 12010931 ~ 12021468 (-) False pwwp2b
TU52938 lncRNA downstream 136866 12007826 ~ 12008029 (-) True G44848
TU52909 lncRNA downstream 230866 11912210 ~ 11914029 (-) True G44820
TU52906 lncRNA downstream 305073 11839452 ~ 11839822 (-) True G44818
TU52647 lncRNA downstream 756949 11387206 ~ 11387946 (-) True G44582
XR_004577842.1 lncRNA upstream 89103 12241609 ~ 12242121 (-) True LOC117596852
TU53414 lncRNA upstream 137821 12290327 ~ 12303541 (-) True G45236
TU53441 lncRNA upstream 216007 12368513 ~ 12369349 (-) True G45249
TU53462 lncRNA upstream 282768 12435274 ~ 12435483 (-) False nin
XR_004577879.1 lncRNA upstream 474540 12627046 ~ 12627481 (-) True LOC117596889
XM_026940033.2 mRNA downstream 114751 12021991 ~ 12030144 (-) True LOC113542467
XM_026940020.2 mRNA downstream 123490 12011395 ~ 12021405 (-) True pwwp2b
XM_026936509.2 mRNA downstream 171390 11817728 ~ 11973505 (-) False LOC113540195
XM_026936515.2 mRNA downstream 171390 11817728 ~ 11973505 (-) True LOC113540195
XM_034302556.1 mRNA downstream 358260 11772007 ~ 11786635 (-) False valopa
XM_026942027.2 mRNA upstream 3711 12156217 ~ 12186613 (-) True srfb
XM_026942017.2 mRNA upstream 3711 12156217 ~ 12186612 (-) False srfb
XM_026936926.2 mRNA upstream 37711 12190217 ~ 12289852 (-) True ptk7b
XM_034302790.1 mRNA upstream 139281 12291787 ~ 12330928 (-) False klc1b
XM_034302791.1 mRNA upstream 139281 12291787 ~ 12330927 (-) False klc1b
trnag-gcc_1 other downstream 436211 11708614 ~ 11708684 (-) True trnag-gcc_1
TU51003 other downstream 2916011 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 3291101 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 3291101 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 3361097 8755869 ~ 8783798 (-) False zdhhc5a
TU53492 other upstream 372130 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 378937 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 479307 12631813 ~ 12633015 (-) False LOC113539135
trnae-cuc_8 other upstream 486746 12639252 ~ 12639323 (-) True trnae-cuc_8
trnak-cuu_1 other upstream 487024 12639530 ~ 12639602 (-) True trnak-cuu_1

Expression Profile