Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU53441 |
| length | 815 |
| lncRNA type | intronic |
| GC content | 0.41 |
| exon number | 2 |
| gene id | G45249 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 12368513 ~ 12369349 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU53414 | lncRNA | downstream | 64972 | 12290327 ~ 12303541 (-) | True | G45236 |
| XR_004577842.1 | lncRNA | downstream | 126392 | 12241609 ~ 12242121 (-) | True | LOC117596852 |
| TU52939 | lncRNA | downstream | 347045 | 12010931 ~ 12021468 (-) | False | pwwp2b |
| TU52938 | lncRNA | downstream | 360484 | 12007826 ~ 12008029 (-) | True | G44848 |
| TU52909 | lncRNA | downstream | 454484 | 11912210 ~ 11914029 (-) | True | G44820 |
| TU53462 | lncRNA | upstream | 65925 | 12435274 ~ 12435483 (-) | False | nin |
| XR_004577879.1 | lncRNA | upstream | 257697 | 12627046 ~ 12627481 (-) | True | LOC117596889 |
| XR_004577878.1 | lncRNA | upstream | 258328 | 12627677 ~ 12628388 (-) | True | LOC117596888 |
| XR_004577880.1 | lncRNA | upstream | 259123 | 12628472 ~ 12629256 (-) | True | LOC117596890 |
| TU53526 | lncRNA | upstream | 345335 | 12714684 ~ 12717329 (-) | True | G45305 |
| XM_026944957.2 | mRNA | downstream | 11745 | 12343235 ~ 12356768 (-) | True | cdkl1 |
| XM_034302790.1 | mRNA | downstream | 37585 | 12291787 ~ 12330928 (-) | False | klc1b |
| XM_034302791.1 | mRNA | downstream | 37586 | 12291787 ~ 12330927 (-) | False | klc1b |
| XM_034302789.1 | mRNA | downstream | 37586 | 12291787 ~ 12330927 (-) | True | klc1b |
| XM_034302792.1 | mRNA | downstream | 37586 | 12304731 ~ 12330927 (-) | False | klc1b |
| XM_026932564.2 | mRNA | upstream | 52932 | 12422281 ~ 12431644 (-) | True | sav1 |
| XM_026940747.2 | mRNA | upstream | 65760 | 12435109 ~ 12465063 (-) | True | nin |
| XM_026940757.2 | mRNA | upstream | 65761 | 12435110 ~ 12465056 (-) | False | nin |
| XM_026940765.2 | mRNA | upstream | 68474 | 12437823 ~ 12465061 (-) | False | nin |
| XM_026939970.2 | mRNA | upstream | 103178 | 12472527 ~ 12485626 (-) | True | pygl |
| TU53378 | other | downstream | 216007 | 12144895 ~ 12152506 (-) | False | tmem254 |
| trnag-gcc_1 | other | downstream | 659829 | 11708614 ~ 11708684 (-) | True | trnag-gcc_1 |
| TU51003 | other | downstream | 3139629 | 9224881 ~ 9228884 (-) | True | sf3b5 |
| TU50809 | other | downstream | 3514719 | 8801243 ~ 8853794 (-) | True | G42967 |
| TU53492 | other | upstream | 155287 | 12524636 ~ 12534075 (-) | False | LOC113537616 |
| TU53486 | other | upstream | 162094 | 12531443 ~ 12534075 (-) | False | LOC113537616 |
| TU53537 | other | upstream | 262464 | 12631813 ~ 12633015 (-) | False | LOC113539135 |
| trnae-cuc_8 | other | upstream | 269903 | 12639252 ~ 12639323 (-) | True | trnae-cuc_8 |
| trnak-cuu_1 | other | upstream | 270181 | 12639530 ~ 12639602 (-) | True | trnak-cuu_1 |
