RNA id: TU53486


Basic Information

Item Value
RNA id TU53486
length 708
RNA type TUCP
GC content 0.46
exon number 2
gene id LOC113537616
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12524636 ~ 12534215 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGTTTGATGACTGACACACATAATCTCTTCCGCACTCTGGTCCAGCCAGTCCAGTTGGTAGAGAGAACAATTTTCACAAGGCCATCATGTCGGGACAAGTCTAGAAGAGACTGGTCTAAAGTCTCCCACTGTCTTCCTGATCTCTTGCTTCGAACTCAGTCTCTATGATTTCAACCGTCTTGAGGAGACCATGGAGAGGGAACTTCCCCAGCACAAGAGAGATGTACTGATGCTGGCACTTCCAACCATCACTCTGGAGATCAACGAGAGGAAAAAGAAGGCACTGCAGAGGAACATATGGAAGTTGTCTCTGCTCTCTGCCTCGGTTGCAGCTGTGCCGATACCTGTTGTAAATGCAGCTGCATCAATCAGTGTAGATGTGGCCATCTTGGTGTCAGAGCTTAAGAAATATTACAATGCCTTCAATTTGGACCCAGCCTCCATACAGAAGCTTTCTGAGAGATCAGGGAAGTCAGTAGATGAGCTAAAAGCTGTGCTGAAATCTCCTCTAAATCAAGAAATAACCAAAGATCTGGTCATTAAGTTGCTGACAAATTCAAGTCTTTTTGCTGTAGAATCAGCAGTAGAATACTGGCTGGGTTTAATTCCTGTTCTGGGATCTCTGACAGCTGGGTCACTGTCCTTTGCTACTGTTTACTTCATACTGCAACGTTGTCTTAATGAGCTCGCTGAAGATGCCCGCAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53462 lncRNA downstream 95960 12435274 ~ 12435483 (-) False nin
TU53441 lncRNA downstream 162094 12368513 ~ 12369349 (-) True G45249
TU53414 lncRNA downstream 227902 12290327 ~ 12303541 (-) True G45236
XR_004577842.1 lncRNA downstream 289322 12241609 ~ 12242121 (-) True LOC117596852
TU52939 lncRNA downstream 509975 12010931 ~ 12021468 (-) False pwwp2b
XR_004577879.1 lncRNA upstream 92971 12627046 ~ 12627481 (-) True LOC117596889
XR_004577878.1 lncRNA upstream 93602 12627677 ~ 12628388 (-) True LOC117596888
XR_004577880.1 lncRNA upstream 94397 12628472 ~ 12629256 (-) True LOC117596890
TU53526 lncRNA upstream 180609 12714684 ~ 12717329 (-) True G45305
TU53555 lncRNA upstream 185554 12719629 ~ 12721353 (-) True G45324
XM_026939991.2 mRNA downstream 23847 12485749 ~ 12507596 (-) False trim9
XM_026939982.2 mRNA downstream 23847 12485749 ~ 12507596 (-) True trim9
XM_026939970.2 mRNA downstream 45817 12472527 ~ 12485626 (-) True pygl
XM_026940765.2 mRNA downstream 66382 12437823 ~ 12465061 (-) False nin
XM_026940757.2 mRNA downstream 66387 12435110 ~ 12465056 (-) False nin
XM_034301495.1 mRNA upstream 11803 12545878 ~ 12552407 (-) False LOC113537655
XM_034301490.1 mRNA upstream 11803 12545878 ~ 12550564 (-) False LOC113537655
XM_034301500.1 mRNA upstream 14162 12548237 ~ 12553072 (-) False LOC113537655
XM_034301503.1 mRNA upstream 14162 12548237 ~ 12552894 (-) False LOC113537655
XM_034301493.1 mRNA upstream 14162 12548237 ~ 12552407 (-) False LOC113537655
TU53378 other downstream 378937 12144895 ~ 12152506 (-) False tmem254
trnag-gcc_1 other downstream 822759 11708614 ~ 11708684 (-) True trnag-gcc_1
TU51003 other downstream 3302559 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 3677649 8801243 ~ 8853794 (-) True G42967
TU53537 other upstream 97738 12631813 ~ 12633015 (-) False LOC113539135
trnae-cuc_8 other upstream 105177 12639252 ~ 12639323 (-) True trnae-cuc_8
trnak-cuu_1 other upstream 105455 12639530 ~ 12639602 (-) True trnak-cuu_1
trnak-cuu_2 other upstream 134418 12668493 ~ 12668565 (-) True trnak-cuu_2
trnae-cuc_9 other upstream 134745 12668820 ~ 12668891 (-) True trnae-cuc_9

Expression Profile