Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034303041.1 |
| length | 1005 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 3 |
| gene id | si:ch211-223p8.8 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 13032050 ~ 13034350 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006470 | protein dephosphorylation | biological_process |
| GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | molecular_function |
| GO:0004725 | protein tyrosine phosphatase activity | molecular_function |
| id | description |
|---|---|
| K14165 | K14165; atypical dual specificity phosphatase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU53723 | lncRNA | upstream | 914 | 12960090 ~ 13031136 (+) | True | G45453 |
| TU53729 | lncRNA | upstream | 14450 | 13011946 ~ 13017600 (+) | True | G45459 |
| TU53620 | lncRNA | upstream | 161827 | 12870003 ~ 12870223 (+) | True | G45376 |
| TU53604 | lncRNA | upstream | 210661 | 12820856 ~ 12821389 (+) | True | G45360 |
| TU53595 | lncRNA | upstream | 220800 | 12810919 ~ 12811250 (+) | True | G45351 |
| TU53744 | lncRNA | downstream | 18652 | 13052240 ~ 13052529 (+) | True | G45473 |
| TU53786 | lncRNA | downstream | 62083 | 13095671 ~ 13095881 (+) | True | G45508 |
| TU53888 | lncRNA | downstream | 278089 | 13311677 ~ 13312080 (+) | True | G45592 |
| TU53890 | lncRNA | downstream | 279406 | 13312994 ~ 13313221 (+) | True | G45594 |
| TU53962 | lncRNA | downstream | 342211 | 13375799 ~ 13375999 (+) | True | G45640 |
| XM_026937794.2 | mRNA | upstream | 26727 | 12982421 ~ 13005323 (+) | True | col17a1b |
| XM_026933476.2 | mRNA | upstream | 55302 | 12957157 ~ 12976748 (+) | True | cfap43 |
| XM_034302747.1 | mRNA | upstream | 55302 | 12957157 ~ 12976748 (+) | False | cfap43 |
| XM_034302746.1 | mRNA | upstream | 55302 | 12957420 ~ 12976748 (+) | False | cfap43 |
| XM_034302749.1 | mRNA | upstream | 58602 | 12957156 ~ 12973448 (+) | False | cfap43 |
| XM_026941889.2 | mRNA | downstream | 1072 | 13034660 ~ 13039337 (+) | True | zgc:153981 |
| XM_026943937.2 | mRNA | downstream | 6619 | 13040207 ~ 13055375 (+) | True | dusp13a |
| XM_026944816.2 | mRNA | downstream | 196074 | 13229662 ~ 13236979 (+) | True | ap3m1 |
| XM_034302959.1 | mRNA | downstream | 261644 | 13295232 ~ 13310269 (+) | False | chuk |
| XM_034302960.1 | mRNA | downstream | 262226 | 13295814 ~ 13310269 (+) | False | chuk |
| XR_003404144.2 | other | upstream | 32088 | 12982406 ~ 12999962 (+) | False | col17a1b |
| XR_004577802.1 | other | upstream | 95248 | 12929559 ~ 12936802 (+) | False | spef1 |
| XR_004577803.1 | other | upstream | 95248 | 12929559 ~ 12936802 (+) | False | spef1 |
| trnat-ugu | other | upstream | 364164 | 12667814 ~ 12667886 (+) | True | trnat-ugu |
| TU53286 | other | upstream | 388855 | 12639836 ~ 12643195 (+) | False | LOC117596823 |
| TU54033 | other | downstream | 464504 | 13498092 ~ 13501046 (+) | False | pcbd1 |
| XR_003404567.2 | other | downstream | 1179814 | 14213402 ~ 14283168 (+) | False | slc24a3 |
| XR_004577898.1 | other | downstream | 1327779 | 14361367 ~ 14367446 (+) | False | cgas |
| TU55629 | other | downstream | 2759840 | 15793428 ~ 15797204 (+) | False | eif4ebp2 |
| XR_003404341.2 | other | downstream | 3037126 | 16070714 ~ 16073067 (+) | True | cxcl18a.1 |
