RNA id: TU53890


Basic Information

Item Value
RNA id TU53890
length 228
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G45594
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 13312994 ~ 13313221 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tggatgtgatcggttatgattggatatgatcggttatgattggatgtgatcggttatgattggatgtgataggttcgTTCGATAAATCCCGCCTCTTGTTTTCGTGCAAGTTCTCGGCctgaatggacaaaatgatggcgttactgactaattataaagtaagtaaacaacTCACCCGCTTAGATATCACTGCTTTGTGTCacgtcaaaaatgaaaacttgaaatgGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53888 lncRNA upstream 914 13311677 ~ 13312080 (+) True G45592
TU53786 lncRNA upstream 217113 13095671 ~ 13095881 (+) True G45508
TU53744 lncRNA upstream 260465 13052240 ~ 13052529 (+) True G45473
TU53723 lncRNA upstream 281858 12960090 ~ 13031136 (+) True G45453
TU53729 lncRNA upstream 295394 13011946 ~ 13017600 (+) True G45459
TU53962 lncRNA downstream 62578 13375799 ~ 13375999 (+) True G45640
TU54050 lncRNA downstream 208618 13521839 ~ 13599015 (+) True G45712
TU54051 lncRNA downstream 209685 13522906 ~ 13594825 (+) True G45713
XR_003404657.2 lncRNA downstream 330899 13644120 ~ 13645338 (+) True LOC113545747
XR_004577873.1 lncRNA downstream 576058 13889279 ~ 13889849 (+) True LOC117596881
XM_034302959.1 mRNA upstream 2725 13295232 ~ 13310269 (+) False chuk
XM_034302960.1 mRNA upstream 2725 13295814 ~ 13310269 (+) False chuk
XM_026940628.2 mRNA upstream 2725 13295902 ~ 13310269 (+) True chuk
XM_026940636.2 mRNA upstream 2725 13295902 ~ 13310269 (+) False chuk
XM_026944816.2 mRNA upstream 76015 13229662 ~ 13236979 (+) True ap3m1
XM_034303028.1 mRNA downstream 1374 13314595 ~ 13317625 (+) True LOC113543512
XM_026944444.2 mRNA downstream 12672 13325893 ~ 13329493 (+) True calhm3
XM_034301642.1 mRNA downstream 16693 13329914 ~ 13333161 (+) True calhm1
XM_026942239.2 mRNA downstream 20120 13333341 ~ 13338334 (+) True LOC113543782
XM_034302547.1 mRNA downstream 20120 13333341 ~ 13338334 (+) False LOC113543782
TU53738 other upstream 279746 13032279 ~ 13033248 (+) False si:ch211-223p8.8
XR_003404144.2 other upstream 313032 12982406 ~ 12999962 (+) False col17a1b
XR_004577802.1 other upstream 376192 12929559 ~ 12936802 (+) False spef1
XR_004577803.1 other upstream 376192 12929559 ~ 12936802 (+) False spef1
trnat-ugu other upstream 645108 12667814 ~ 12667886 (+) True trnat-ugu
TU54033 other downstream 184871 13498092 ~ 13501046 (+) False pcbd1
XR_003404567.2 other downstream 900181 14213402 ~ 14283168 (+) False slc24a3
XR_004577898.1 other downstream 1048146 14361367 ~ 14367446 (+) False cgas
TU55629 other downstream 2480207 15793428 ~ 15797204 (+) False eif4ebp2
XR_003404341.2 other downstream 2757493 16070714 ~ 16073067 (+) True cxcl18a.1

Expression Profile