Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026935703.2 |
| length | 824 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 4 |
| gene id | pcbd1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 13498048 ~ 13501050 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006729 | tetrahydrobiopterin biosynthetic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0008124 | 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | molecular_function |
| GO:0004505 | phenylalanine 4-monooxygenase activity | molecular_function |
| id | description |
|---|---|
| K01724 | PCBD, phhB; 4a-hydroxytetrahydrobiopterin dehydratase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU53962 | lncRNA | upstream | 122049 | 13375799 ~ 13375999 (+) | True | G45640 |
| TU53890 | lncRNA | upstream | 184827 | 13312994 ~ 13313221 (+) | True | G45594 |
| TU53888 | lncRNA | upstream | 185968 | 13311677 ~ 13312080 (+) | True | G45592 |
| TU53786 | lncRNA | upstream | 402167 | 13095671 ~ 13095881 (+) | True | G45508 |
| TU53744 | lncRNA | upstream | 445519 | 13052240 ~ 13052529 (+) | True | G45473 |
| TU54050 | lncRNA | downstream | 20789 | 13521839 ~ 13599015 (+) | True | G45712 |
| TU54051 | lncRNA | downstream | 21856 | 13522906 ~ 13594825 (+) | True | G45713 |
| XR_003404657.2 | lncRNA | downstream | 143070 | 13644120 ~ 13645338 (+) | True | LOC113545747 |
| XR_004577873.1 | lncRNA | downstream | 388229 | 13889279 ~ 13889849 (+) | True | LOC117596881 |
| TU54243 | lncRNA | downstream | 393092 | 13894142 ~ 13896535 (+) | True | G45875 |
| XM_026939104.2 | mRNA | upstream | 67788 | 13419948 ~ 13430260 (+) | True | sec23ip |
| XM_026937959.2 | mRNA | upstream | 93373 | 13385486 ~ 13404675 (+) | True | inpp5f |
| XM_026932061.2 | mRNA | upstream | 114705 | 13376724 ~ 13383343 (+) | True | bag3 |
| XM_026938675.2 | mRNA | upstream | 131981 | 13359076 ~ 13366067 (+) | True | pkd2l1 |
| XM_026943888.2 | mRNA | upstream | 141616 | 13353569 ~ 13356432 (+) | False | atoh7 |
| XM_026941819.2 | mRNA | downstream | 87266 | 13588316 ~ 13633478 (+) | True | bcl11aa |
| XM_026939331.2 | mRNA | downstream | 534588 | 14035638 ~ 14056463 (+) | True | fancl |
| XM_026943791.2 | mRNA | downstream | 692784 | 14193834 ~ 14197074 (+) | True | soul2 |
| XM_034303068.1 | mRNA | downstream | 712319 | 14213369 ~ 14286542 (+) | False | slc24a3 |
| XM_026944022.2 | mRNA | downstream | 712352 | 14213402 ~ 14286542 (+) | True | slc24a3 |
| TU53738 | other | upstream | 464800 | 13032279 ~ 13033248 (+) | False | si:ch211-223p8.8 |
| XR_003404144.2 | other | upstream | 498086 | 12982406 ~ 12999962 (+) | False | col17a1b |
| XR_004577802.1 | other | upstream | 561246 | 12929559 ~ 12936802 (+) | False | spef1 |
| XR_004577803.1 | other | upstream | 561246 | 12929559 ~ 12936802 (+) | False | spef1 |
| trnat-ugu | other | upstream | 830162 | 12667814 ~ 12667886 (+) | True | trnat-ugu |
| XR_003404567.2 | other | downstream | 712352 | 14213402 ~ 14283168 (+) | False | slc24a3 |
| XR_004577898.1 | other | downstream | 860317 | 14361367 ~ 14367446 (+) | False | cgas |
| TU55629 | other | downstream | 2292378 | 15793428 ~ 15797204 (+) | False | eif4ebp2 |
| XR_003404341.2 | other | downstream | 2569664 | 16070714 ~ 16073067 (+) | True | cxcl18a.1 |
| TU55689 | other | downstream | 2569709 | 16070759 ~ 16071920 (+) | False | cxcl18a.1 |
